=== Poster Design: ===

• create jinja2 template for poster.
• create some static javascript functions
• import all needed files (brain.js, bokeh.js, etc.)
• create python code to generate plots as needed => AS A SERVER.
• Listen to events from all the different plots. => Update data source for regression. => Update selections for others.
• All plots have a CustomJS to update the brain, using library functions in brain.js.

EASY.

=== What's done: ===

• manhattan plot (ish) - running from poster! python gwas.py display MRI_cort_area_ctx_frontalpole_AI --output-format flask
• Brain navigator with stats python brain.py MRI_cort_area.ctx. AI:mean --output-format flask
• Scatter plot python scatter.py MRI_cort_area.ctx. AI:mean AI:std LH_PLUS_RH:mean --output-format bokeh
• Similarity matrix python similarity.py MRI_cort_area.ctx partial-correlation "Asymmetry Index" --output-format bokeh (note the funky missing dot on the prefix)

=== To do:===

• move selector code OUT of roygbiv and into SfN2015

• make bokeh plots output to data or plots dir.

• combine flask server into one uber-server, from all the apps.

  • use urls like /[app]/[plot]/...

• deployment script - to copy files to a structure that will work for non-flask servers (no url re-routing)

• Regression plots - multiple per area, based on what you want to see (age, gender, both). Plot both when brain is clicked.

• Export / import of data

• Correlation between thickness and area

• GWAS on frontal pole

• Brain map for PCA components

• interactions between plots

Must:

• Make a poster
• put things on the poster!