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stages/ostree.encapsulate: use new entrypoint on rpm-ostree >=2023.2
rpm-ostree 2023.2 dropped the `rpm-ostree container-encapsulate` entrypoint. Instead, we have to use `rpm-ostree compose container-encapsulate`. Adjust the code that it selects the correct entrypoint based on the rpm-ostree version. Since the new stage now requires python-yaml, add it to the buildroot and regenerate all manifests.
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