Add comprehensive comparison with orderly2, e3krisztian/bead, and packit #7
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This PR implements a comprehensive comparison between bead and related reproducible research tools as requested in the issue. The comparison covers four key tools in the reproducible research ecosystem:
Key Additions
1. Detailed Tool Comparison (
tool-comparison.md)A 315-line comprehensive analysis covering:
2. Practical Alternatives Guide (
docs/_guides/alternatives.md)A focused 155-line guide for practitioners including:
3. Enhanced Cross-References
Key Insights
The comparison reveals these tools are complementary rather than competitive:
Many teams can benefit from integrated workflows that combine tools - for example, using bead for multi-language data processing, orderly2 for R-specific analysis, and packit for web-based result dissemination.
Documentation Structure
The comparison is accessible at multiple levels:
docs/_guides/alternatives.mdfor choosing toolstool-comparison.mdfor detailed evaluationThis addresses the need for researchers to understand the landscape of reproducible research tools and make informed decisions based on their specific technical requirements, team composition, and workflow needs.
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