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updated changed log.
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TimothyStiles committed Dec 1, 2023
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Expand Up @@ -7,28 +7,5 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

## [Unreleased]

### Added
- Alternative start codons can now be used in the `synthesis/codon` DNA -> protein translation package (#305)
- Added a parser and writer for the `pileup` sequence alignment format (#329)
- Added statistics to the `synthesis/codon` package (keeping track of the observed start codon occurrences in a translation table) (#350)
- Added option to fragmenter to fragment with only certain overhangs (#387)




### Fixed
- `fastq` parser no longer becomes de-aligned when reading (#325)
- `fastq` now handles optionals correctly (#323)
- No more data race in GoldenGate (#276)

### Breaking
- CutWithEnzymeByName is now a receiver of EnzymeManager. GoldenGate now takes an Enzyme instead of the name of an enzyme.
This is an effort to remove dependence on some package level global state and build some flexibility managing enzymes
over the lifetime of the program.
- Enzyme.OverhangLen is now named Enzyme.OverhangLength

## [0.26.0] - 2023-07-22
Oops, we weren't keeping a changelog before this tag!

[unreleased]: https://github.com/TimothyStiles/poly/compare/v0.26.0...main
[0.26.0]: https://github.com/TimothyStiles/poly/releases/tag/v0.26.0
- Fixed bug that produced wrong overhang in linear, non-directional, single cut reactions. #408

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