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poly-v0.9.0

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@TimothyStiles TimothyStiles released this 05 Jun 17:25
· 56 commits to prime since this release
7825244

BREAKING CHANGES

  • fasta parsing has been moved to its own separate sub-package and is no longer supported with previous syntax or in CLI. It also no longer parses to Sequence struct by default.

  • All sequences that are translated are now forced to uppercase.

  • All CLI commands that don't involve file converting or file hashing functionality have been deprecated in anticipation of an overhaul.

  • Poly only ships one sequence hashing standard seqhashv1 and has deprecated all support for other hashing functions. You can still use Booth Least Rotation in combo with your favorite hash function.

Changelog

9bf2993 Add random protein sequence function (#121)
17f27e4 Added Fasta parser (#113)
7937615 Adds force upper case during translations (#158)
72be193 All iupac variants (#106)
f8cbd8f Fixed EOF error call (#167)
f7c6987 Fixed pichia error by adding multiline genbank feature locations (#125)
9d2eea8 Make writes to temporary files in io tests (#149)
b98f224 Markdown cleanup (#112)
dd81ed2 Rebase parser (#111)
7825244 Simplified names in parsers (#168)
e69df2e Uniprot XML parser (#156)
f6e7dec added barcoding functions (#87)
6886868 bump golang to 1.16 (#150)
a1ba1c5 integrated new linter, removed deadcode, and deprecated parts of CLI and hashing. (#116)