v0.4.0

This release adds support for the new esummary data format of ClinVar. The previous versions can no longer be used as the esummary response no longer contains clinical-significance which results in a KeyError.

For details see: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/release_notes/20240129WebRelease.pdf

Full Changelog: v0.3.1.2...v0.4.0

v0.3.1

All request towards ClinVar are retried up to 10 times to ensure robustness against unjustified HTTP 400 and 500 errors.

v0.3.0

Major:

• --input/-i now supports folders
• candidates on failed searches are saved to csv and json
• results folder name contains a timestamp
• warnings about using canonical_spdi or grch38 for matching are removed
• logs contain the version
• debug log and console log files are now saved to the results folder

Minor:

• --version/-v argument added
• debug log now contains host, cwd and arguments

v0.2

First release for testing purposes. This release can handle all SNP mutations from the Ion Torrent result files.