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benfulcher committed Jul 20, 2020
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# AllenSDK

[![Twitter](https://img.shields.io/twitter/url/https/twitter.com/bendfulcher.svg?style=social&label=Follow%20%40bendfulcher)](https://twitter.com/bendfulcher)

This repository contains code for:
1. Retrieving gene-expression data from the AllenSDK; and
2. processing it into nice structures for further analysis in Matlab.

Requires Matlab and python.
The [AllenSDK package](http://alleninstitute.github.io/AllenSDK/install.html) for python must be installed.

Please send questions by raising an Issue, or [sending me an email](mailto:ben.d.fulcher@gmail.com)
Twitter: @bendfulcher
Please send questions by raising an Issue, or [sending me an email](mailto:ben.d.fulcher@gmail.com).

This pipeline is based on code developed for [Fulcher and Fornito, _PNAS_ (2016)](https://doi.org/10.1073/pnas.1513302113), and used for [Fulcher et al., _PNAS_ (2019)](https://doi.org/10.1073/pnas.1814144116).

## Getting a region-by-gene matrix

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