Merge pull request #95 from berkeleybop/table-2

table-2
berkeleybop · Aug 5, 2024 · 4d59e46 · 4d59e46
2 parents a0fdc30 + 9fdc32a
commit 4d59e46
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diff --git a/branch-counts.rq b/branch-counts.rq
@@ -0,0 +1,12 @@
+prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+prefix owl: <http://www.w3.org/2002/07/owl#>
+
+select ?branch (count(distinct ?child_class) as ?class_count)
+ where {
+    ?branch rdfs:subClassOf owl:Thing .
+    ?child_class rdfs:subClassOf* ?branch .
+}
+group by ?branch
+order by ?branch
+
+
diff --git a/is_a-edge-counts.rq b/is_a-edge-counts.rq
@@ -0,0 +1,21 @@
+prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+prefix owl: <http://www.w3.org/2002/07/owl#>
+prefix oio: <http://www.geneontology.org/formats/oboInOwl#>
+
+select distinct ?branch ?child_class ?is_a_edge
+ where {
+    values ?syn_type {
+        oio:hasExactSynonym
+        oio:hasRelatedSynonym
+    }
+    ?branch rdfs:subClassOf owl:Thing .
+    ?child_class rdfs:subClassOf* ?branch .
+    ?child_class rdfs:subClassOf ?is_a_edge .
+    minus {
+        ?child_class rdfs:subClassOf owl:Thing .
+    }
+    filter(isiri(?is_a_edge))
+}
+order by ?branch ?child_class ?is_a_edge
+
+
diff --git a/synonym-counts.rq b/synonym-counts.rq
@@ -0,0 +1,18 @@
+prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+prefix owl: <http://www.w3.org/2002/07/owl#>
+prefix oio: <http://www.geneontology.org/formats/oboInOwl#>
+
+select ?branch (count(distinct ?synonym) as ?synonym_count)
+ where {
+    values ?syn_type {
+        oio:hasExactSynonym
+        oio:hasRelatedSynonym
+    }
+    ?branch rdfs:subClassOf owl:Thing .
+    ?child_class rdfs:subClassOf* ?branch .
+    ?child_class ?syn_type ?synonym .
+}
+group by ?branch
+order by ?branch
+
+
diff --git a/table-2.Makefile b/table-2.Makefile
@@ -0,0 +1,11 @@
+.PHONY: branch-counts synonym-counts is_a-edge-counts
+
+branch-counts.tsv: src/ontology/aio.owl
+	arq --data $< --query branch-counts.rq --results=TSV > $@
+
+synonym-counts.tsv: src/ontology/aio.owl
+	arq --data $< --query synonym-counts.rq --results=TSV > $@
+
+is_a-edge-counts.tsv: src/ontology/aio.owl
+	arq --data $< --query is_a-edge-counts.rq --results=TSV > $@
+