This is a guide to transcriptome assembly and analysis used in the Palumbi Lab at Hopkins Marine Station, Stanford University.
See the Palumbi Lab's Simple Fool's Guide to Population Genomics for helpful background information. Warning: scripts referred to in the SFG manual are outdated and difficult to use.
Refer to my in house guide to follow our pipeline. This doc is currently in progress and being updated regularly.
I maintain our scripts more regularly in this repository.