Galaxy Workbench for NGS-preprocessing

🐳 Galaxy Docker repository for preprocessing of NGS data

Installed tools

• Bowtie2
• FASTQC
• deepTools
• BWA
• Bowtie2

Requirements

• Docker for Linux / Windows / OSX
• Kitematic for Windows / OS-X (Optional)

Usage

To launch:

docker run -i -t -p 8080:80 bgruening/galaxy-ngs-preprocessing

For more details about this command line or specific usage, please consult the README of the main Galaxy Docker image, on which the current image is based.

Contributers

• Bjoern Gruening
• Bérénice Batut

History

• 0.1: Initial release!

Support & Bug Reports

You can file an github issue or ask us on the Galaxy development list.