Merge pull request galaxyproject#18789 from nsoranzo/CI_python_caches

Cache pip directory as part of `setup-python` action
bgruening · Sep 9, 2024 · cdfb31c · cdfb31c
2 parents 8d9fc6b + d3c369f
commit cdfb31c
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Showing 24 changed files with 55 additions and 137 deletions.
diff --git a/.github/workflows/api.yaml b/.github/workflows/api.yaml
@@ -55,15 +55,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/check_test_class_names.yaml b/.github/workflows/check_test_class_names.yaml
@@ -20,11 +20,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'requirements.txt'
       - name: Install Python dependencies
         run: pip install -r requirements.txt -r lib/galaxy/dependencies/dev-requirements.txt
       - name: Run tests

diff --git a/.github/workflows/converter_tests.yaml b/.github/workflows/converter_tests.yaml
@@ -44,12 +44,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache venv dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Move test data
         run: rsync -av --remove-source-files --exclude .git galaxy-test-data/ 'galaxy root/test-data/'
       - name: Install planemo

diff --git a/.github/workflows/cwl_conformance.yaml b/.github/workflows/cwl_conformance.yaml
@@ -48,15 +48,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/db_indexes.yaml b/.github/workflows/db_indexes.yaml
@@ -45,16 +45,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache tox env
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/deployment.yaml b/.github/workflows/deployment.yaml
@@ -37,11 +37,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'requirements.txt'
       - uses: nanasess/setup-chromedriver@v2
       - name: Run tests
         run: bash ./test/deployment/usegalaxystar.bash

diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
@@ -32,11 +32,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'requirements.txt'
       - name: Install Python dependencies
         run: pip install -r requirements.txt -r lib/galaxy/dependencies/dev-requirements.txt sphinxcontrib-simpleversioning
       - name: Add Google Analytics to doc/source/conf.py

diff --git a/.github/workflows/first_startup.yaml b/.github/workflows/first_startup.yaml
@@ -40,16 +40,12 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache tox env
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/framework_tools.yaml b/.github/workflows/framework_tools.yaml
@@ -51,15 +51,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/framework_workflows.yaml b/.github/workflows/framework_workflows.yaml
@@ -51,15 +51,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/integration.yaml b/.github/workflows/integration.yaml
@@ -76,16 +76,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/integration_selenium.yaml b/.github/workflows/integration_selenium.yaml
@@ -54,15 +54,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
@@ -32,15 +32,15 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: |
+            ${{ env.LINT_PATH }}
+            ${{ env.TYPE_PATH }}
+            ${{ env.CORE_PATH }}
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles(env.LINT_PATH, env.TYPE_PATH, env.CORE_PATH) }}
       - name: Cache tox env
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/lint_openapi_schema.yml b/.github/workflows/lint_openapi_schema.yml
@@ -25,23 +25,20 @@ jobs:
       - uses: actions/checkout@v4
         with:
           path: 'galaxy root'
-      - uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.python-version }}
       - uses: actions/setup-node@v4
         with:
           node-version: '18.12.1'
           cache: 'yarn'
           cache-dependency-path: 'galaxy root/client/yarn.lock'
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/mulled.yaml b/.github/workflows/mulled.yaml
@@ -28,15 +28,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache tox env
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/osx_startup.yaml b/.github/workflows/osx_startup.yaml
@@ -34,21 +34,11 @@ jobs:
           node-version: '18.12.1'
           cache: 'yarn'
           cache-dependency-path: 'galaxy root/client/yarn.lock'
-      - name: Get full Python version
-        id: full-python-version
-        shell: bash
-        run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
       - name: Cache pip dir
         uses: actions/cache@v4
-        id: pip-cache
         with:
           path: ~/Library/Caches/pip
           key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
-      - name: Cache tox env
-        uses: actions/cache@v4
-        with:
-          path: .tox
-          key: tox-cache-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-osx
       - name: Install miniforge  # use this job to test using Python from a conda environment
         uses: conda-incubator/setup-miniconda@v3
         with:

diff --git a/.github/workflows/performance.yaml b/.github/workflows/performance.yaml
@@ -50,15 +50,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/reports_startup.yaml b/.github/workflows/reports_startup.yaml
@@ -35,16 +35,12 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/selenium.yaml b/.github/workflows/selenium.yaml
@@ -59,15 +59,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with:

diff --git a/.github/workflows/test_galaxy_packages.yaml b/.github/workflows/test_galaxy_packages.yaml
@@ -31,11 +31,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Install ffmpeg
         run: sudo apt-get update && sudo apt-get -y install ffmpeg
       - name: Install tox

diff --git a/.github/workflows/test_galaxy_packages_for_pulsar.yaml b/.github/workflows/test_galaxy_packages_for_pulsar.yaml
@@ -28,11 +28,8 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Install Apptainer's singularity
         uses: eWaterCycle/setup-apptainer@v2
       - name: Install ffmpeg

diff --git a/.github/workflows/toolshed.yaml b/.github/workflows/toolshed.yaml
@@ -45,16 +45,12 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: 'galaxy root/requirements.txt'
       - name: Get full Python version
         id: full-python-version
         shell: bash
         run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
-      - name: Cache pip dir
-        uses: actions/cache@v4
-        id: pip-cache
-        with:
-          path: ~/.cache/pip
-          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
       - name: Cache galaxy venv
         uses: actions/cache@v4
         with: