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Update Python dependencies
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@galaxybot @nsoranzo
galaxybot authored and nsoranzo committed Jul 12, 2023
1 parent f030fe1 commit d349bdf
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Showing 3 changed files with 22 additions and 22 deletions.
20 changes: 10 additions & 10 deletions lib/galaxy/dependencies/dev-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ aiohttp==3.8.4 ; python_version >= "3.7" and python_version < "3.12"
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
alabaster==0.7.13 ; python_version >= "3.7" and python_version < "3.12"
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
anyio==3.7.0 ; python_version >= "3.7" and python_version < "3.12"
anyio==3.7.1 ; python_version >= "3.7" and python_version < "3.12"
ase==3.22.1 ; python_version >= "3.7" and python_version < "3.12"
async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.12"
asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8"
Expand All @@ -18,15 +18,15 @@ cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8"
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12"
certifi==2023.5.7 ; python_version >= "3.7" and python_version < "3.12"
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12"
charset-normalizer==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
charset-normalizer==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
click-repl==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
click==8.1.3 ; python_version >= "3.7" and python_version < "3.12"
click==8.1.4 ; python_version >= "3.7" and python_version < "3.12"
codespell==2.2.5 ; python_version >= "3.7" and python_version < "3.12"
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt")
coverage[toml]==7.2.7 ; python_version >= "3.7" and python_version < "3.12"
cryptography==41.0.1 ; python_version >= "3.7" and python_version < "3.12" and sys_platform == "linux"
cryptography==41.0.2 ; python_version >= "3.7" and python_version < "3.12" and sys_platform == "linux"
cwltest==2.3.20230527113600 ; python_version >= "3.7" and python_version < "3.12"
cycler==0.11.0 ; python_version >= "3.7" and python_version < "3.12"
darker==1.7.1 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -41,7 +41,7 @@ frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.12"
future==0.18.3 ; python_version >= "3.7" and python_version < "3.12"
galaxy-release-util==0.1.4 ; python_version >= "3.7" and python_version < "3.12"
h11==0.14.0 ; python_version >= "3.7" and python_version < "3.12"
httpcore==0.17.2 ; python_version >= "3.7" and python_version < "3.12"
httpcore==0.17.3 ; python_version >= "3.7" and python_version < "3.12"
httpx==0.24.1 ; python_version >= "3.7" and python_version < "3.12"
idna==3.4 ; python_version >= "3.7" and python_version < "3.12"
imagesize==1.4.1 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -57,12 +57,12 @@ junit-xml==1.9 ; python_version >= "3.7" and python_version < "3.12"
keyring==24.1.1 ; python_version >= "3.7" and python_version < "3.12"
kiwisolver==1.4.4 ; python_version >= "3.7" and python_version < "3.12"
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.12"
lxml==4.9.3 ; python_version >= "3.7" and python_version < "3.12"
markdown-it-py==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
markdown-it-reporter==0.0.2 ; python_version >= "3.7" and python_version < "3.12"
markupsafe==2.1.3 ; python_version >= "3.7" and python_version < "3.12"
matplotlib==3.5.3 ; python_version >= "3.7" and python_version < "3.8"
matplotlib==3.7.1 ; python_version >= "3.8" and python_version < "3.12"
matplotlib==3.7.2 ; python_version >= "3.8" and python_version < "3.12"
mdit-py-plugins==0.3.5 ; python_version >= "3.7" and python_version < "3.12"
mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12"
mirakuru==2.5.1 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -74,14 +74,14 @@ mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
myst-parser==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8"
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
numpy==1.25.0 ; python_version >= "3.9" and python_version < "3.12"
numpy==1.25.1 ; python_version >= "3.9" and python_version < "3.12"
outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
packaging==23.1 ; python_version >= "3.7" and python_version < "3.12"
pathspec==0.11.1 ; python_version >= "3.7" and python_version < "3.12"
pillow==9.5.0 ; python_version >= "3.7" and python_version < "3.12"
pkce==1.0.3 ; python_version >= "3.7" and python_version < "3.12"
pkginfo==1.9.6 ; python_version >= "3.7" and python_version < "3.12"
platformdirs==3.8.0 ; python_version >= "3.7" and python_version < "3.12"
platformdirs==3.8.1 ; python_version >= "3.7" and python_version < "3.12"
pluggy==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
port-for==0.7.0 ; python_version >= "3.7" and python_version < "3.12"
prettytable==3.7.0 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -93,7 +93,7 @@ pygithub==1.59.0 ; python_version >= "3.7" and python_version < "3.12"
pygments==2.15.1 ; python_version >= "3.7" and python_version < "3.12"
pyjwt[crypto]==2.7.0 ; python_version >= "3.7" and python_version < "3.12"
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
pyparsing==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12"
pyproject-hooks==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
pysocks==1.7.1 ; python_version >= "3.7" and python_version < "3.12"
pytest-asyncio==0.21.0 ; python_version >= "3.7" and python_version < "3.12"
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20 changes: 10 additions & 10 deletions lib/galaxy/dependencies/pinned-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ aioitertools==0.11.0 ; python_version >= "3.7" and python_version < "3.12"
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
alembic==1.11.1 ; python_version >= "3.7" and python_version < "3.12"
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
anyio==3.7.0 ; python_version >= "3.7" and python_version < "3.12"
anyio==3.7.1 ; python_version >= "3.7" and python_version < "3.12"
apispec==6.3.0 ; python_version >= "3.7" and python_version < "3.12"
appdirs==1.4.4 ; python_version >= "3.7" and python_version < "3.12"
arcp==0.2.1 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -36,19 +36,19 @@ cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8"
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12"
certifi==2023.5.7 ; python_version >= "3.7" and python_version < "3.12"
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12"
charset-normalizer==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
charset-normalizer==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.12"
circus==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
click-repl==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
click==8.1.3 ; python_version >= "3.7" and python_version < "3.12"
click==8.1.4 ; python_version >= "3.7" and python_version < "3.12"
cloudauthz==0.6.0 ; python_version >= "3.7" and python_version < "3.12"
cloudbridge==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"
coloredlogs==15.0.1 ; python_version >= "3.7" and python_version < "3.12"
conda-package-streaming==0.8.0 ; python_version >= "3.7" and python_version < "3.12"
cryptography==41.0.1 ; python_version >= "3.7" and python_version < "3.12"
cryptography==41.0.2 ; python_version >= "3.7" and python_version < "3.12"
cwl-upgrader==1.2.8 ; python_version >= "3.7" and python_version < "3.12"
cwl-utils==0.28 ; python_version >= "3.7" and python_version < "3.12"
cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.12"
Expand Down Expand Up @@ -92,13 +92,13 @@ jsonref==1.1.0 ; python_version >= "3.7" and python_version < "3.12"
jsonschema==4.17.3 ; python_version >= "3.7" and python_version < "3.12"
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
lagom==2.4.1 ; python_version >= "3.7" and python_version < "3.12"
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.12"
lxml==4.9.3 ; python_version >= "3.7" and python_version < "3.12"
mako==1.2.4 ; python_version >= "3.7" and python_version < "3.12"
markdown-it-py==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
markdown==3.4.3 ; python_version >= "3.7" and python_version < "3.12"
markupsafe==2.1.3 ; python_version >= "3.7" and python_version < "3.12"
mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12"
mercurial==6.4.5 ; python_version >= "3.7" and python_version < "3.12"
mercurial==6.5 ; python_version >= "3.7" and python_version < "3.12"
mistune==2.0.5 ; python_version >= "3.7" and python_version < "3.12"
mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.12"
msal==1.22.0 ; python_version >= "3.7" and python_version < "3.12"
Expand All @@ -109,9 +109,9 @@ networkx==2.5 ; python_version >= "3.7" and python_version < "3.12"
nodeenv==1.8.0 ; python_version >= "3.7" and python_version < "3.12"
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8"
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
numpy==1.25.0 ; python_version >= "3.9" and python_version < "3.12"
numpy==1.25.1 ; python_version >= "3.9" and python_version < "3.12"
oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.12"
orjson==3.9.1 ; python_version >= "3.7" and python_version < "3.12"
orjson==3.9.2 ; python_version >= "3.7" and python_version < "3.12"
oyaml==1.0 ; python_version >= "3.7" and python_version < "3.12"
packaging==23.1 ; python_version >= "3.7" and python_version < "3.12"
paramiko==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
Expand Down Expand Up @@ -139,7 +139,7 @@ pyjwt[crypto]==2.7.0 ; python_version >= "3.7" and python_version < "3.12"
pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.12"
pylibmagic==0.4.0 ; python_version >= "3.7" and python_version < "3.12"
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
pyparsing==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12"
pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"
pyreadline==2.1 ; sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"
pyrsistent==0.19.3 ; python_version >= "3.7" and python_version < "3.12"
Expand Down Expand Up @@ -174,7 +174,7 @@ six==1.16.0 ; python_version >= "3.7" and python_version < "3.12"
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.12"
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.12"
sqlalchemy==1.4.48 ; python_version >= "3.7" and python_version < "3.12"
sqlalchemy==1.4.49 ; python_version >= "3.7" and python_version < "3.12"
sqlitedict==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
sqlparse==0.4.4 ; python_version >= "3.7" and python_version < "3.12"
starlette-context==0.3.5 ; python_version >= "3.7" and python_version < "3.12"
Expand Down
4 changes: 2 additions & 2 deletions lib/galaxy/dependencies/pinned-typecheck-requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
cffi==1.15.1
cryptography==41.0.1
cryptography==41.0.2
mypy==1.4.1
mypy-extensions==1.0.0
pycparser==2.21
Expand All @@ -8,7 +8,7 @@ tomli==2.0.1
typed-ast==1.5.5
types-bleach==6.0.0.3
types-boto==2.49.18.8
types-contextvars==2.4.7.2
types-contextvars==2.4.7.3
types-dataclasses==0.6.6
types-docutils==0.20.0.1
types-Markdown==3.4.2.9
Expand Down

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