r.txt

CAGEfightR
ComplexHeatmap
DESeq2
DMwR
DiffBind
GenomicRanges
InteractionSet
LOLA
MASS
RRHO2
RobustRankAggreg
TxDb.Mmusculus.UCSC.mm10.knownGene
UpSetRm # slightly modified version, available in scripts folder
boot
broom
caret
colorspace
cowplot
data.table
dendextend
eulerr
fgsea
geometry
ggalluvial
ggbeeswarm2
ggdist
ggforce
gggenes
ggh4x
gghalves
ggnewscale
ggpattern
ggplot2 # slightly modified version from https://github.com/teunbrand/ggplot2/tree/stripclip, also available in scripts folder 
ggpubr
ggrastr
ggrepel
ggridges
ggsignif
ggtext
gplots
gprofiler2
gratia
igraph
matrixStats
mgcv
mixtools
msigdbr
pROC
pals
patchwork
pbapply
plotly
ppcor
rGREAT
rasterly
readxl
rrvgo
rtracklayer
scales
shadowtext
stringr
tidygraph
tidyverse
tximport