This repository contains the code as well as miscellenous processed/supporting data related to the Nagano et al manuscript characterizing nucleome dynamics throughout mammalian germline development. Sequence data are available from SRA, whereas additional raw data (e.g., images) or other intermediate files are available upon request

• Scripts for individual figures are arranged in their respective directories
• Additional scripts for data processing (e.g., image analsysis, CRE clustering) are placed in the scripts directory
• Dependencies for R and Python are separately listed in r.txtand python.txt
• Processed data to facilitate figure generation are saved in data
• Additional data from GEO are to be placed in data following the layout described in data.tree