forked from minillinim/gff2fasta
-
Notifications
You must be signed in to change notification settings - Fork 0
convert a gff file into fasta format
License
biocoder/gff2fasta
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
.d888 .d888 .d8888b. .d888 888
d88P" d88P" d88P Y88b d88P" 888
888 888 888 888 888
.d88b. 888888 888888 .d88P 888888 8888b. .d8888b 888888 8888b.
d88P"88b 888 888 .od888P" 888 "88b 88K 888 "88b
888 888 888 888 d88P" 888 .d888888 "Y8888b. 888 .d888888
Y88b 888 888 888 888" 888 888 888 X88 Y88b. 888 888
"Y88888 888 888 888888888 888 "Y888888 88888P' "Y888 "Y888888
888
Y8b d88P
"Y88P"
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
Convert a gff3 file into a set of fasta sequences
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
A simple script. Can output protein or nucl sequences. Can also output all
"non-ORF" regions and contigs containing no ORFs too.
SEE: gff2fasta.pl -h for more info.
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
Project home page
Information on the source tree, documentation, issues and how to contribute, see
http://github.com/minillinim/gff2fasta
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
Cite
This software is currently unpublished.
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
Copyright © 2012 Michael Imelfort. See LICENSE.txt for further details.
*******************************************************************************
*******************************************************************************
*******************************************************************************
*******************************************************************************
About
convert a gff file into fasta format
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- Perl 100.0%