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Computation of the probabilities under Ford's alpha model of spanning binary trees and shape using Sage's Python.

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This package contains four Python modules containing

  • the Shape class and its associated methods and functions,
  • the PhyloTree class and its associated methods and functions,
  • the Probs module with all the probability functions.
  • the newick module, which can also be found in https://github.com/glottobank/python-newick

It also contains:

  • the HTML documentation of all three Python modules
  • an HTML containing a minimal version of instructions for using these modules
  • the probability under the alpha-model of each dendrogram with <=8 leaves

Finally, it contains the LICENSE associated to the python-newick class (it can be found in https://github.com/glottobank/python-newick ) and Derivative Works, such as this one.

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Computation of the probabilities under Ford's alpha model of spanning binary trees and shape using Sage's Python.

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