dialign-tx: add arm64 build (#53700)

recipes/dialign-tx/Makefile

@@ -0,0 +1,39 @@
+CC=$(CC)
+# debug
+#CPPFLAGS=-g -O0 -Q -v -da
+#CPPFLAGS=-g -O0 -fstack-check -Q -v -da
+
+#CPPFLAGS=-g -D_REENTRANT
+
+# THIS IS FOR THE OPTIMIZED ONE
+#CPPFLAGS=-g 
+#CPPFLAGS=-O3 -march=i686 -funroll-loops
+CPPFLAGS=-g -O3 -Wno-implicit-function-declaration -Wno-format -Wno-unused-comparison -Wno-return-type -funroll-loops -fcommon -march=i686 -mfpmath=sse -msse -mmmx
+#CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__
+
+OBJ_DIR=.
+TARGET=.
+
+OBJ =  \
+	$(OBJ_DIR)/museq.o \
+	$(OBJ_DIR)/parameters.o \
+	$(OBJ_DIR)/io.o \
+	$(OBJ_DIR)/diag.o \
+	$(OBJ_DIR)/alig.o \
+	$(OBJ_DIR)/assemble.o \
+	$(OBJ_DIR)/prob.o \
+	$(OBJ_DIR)/orf.o \
+	$(OBJ_DIR)/translate.o \
+
+
+all: museq
+
+clean:
+	rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx
+
+museq:	$(OBJ)
+	rm -f $(TARGET)/$@
+	$(CC) $(CPPFLAGS) -o $(TARGET)/$@ \
+	$(OBJ) \
+	-pipe -Wall -lm 
+	mv museq dialign-tx

recipes/dialign-tx/Makefile.MAC_OS

@@ -0,0 +1,37 @@
+CC=$(CC)
+# debug
+#CPPFLAGS=-g -O0 -Q -v -da
+#CPPFLAGS=-g -O0 -fstack-check -Q -v -da
+
+#CPPFLAGS=-g -D_REENTRANT
+
+# THIS IS FOR THE OPTIMIZED ONE
+#CPPFLAGS=-g 
+CPPFLAGS=-g -O3 -Wno-implicit-function-declaration -Wno-format -Wno-unused-comparison -Wno-return-type -funroll-loops -fcommon
+
+OBJ_DIR=.
+TARGET=.
+
+OBJ =  \
+	$(OBJ_DIR)/museq.o \
+	$(OBJ_DIR)/parameters_MAC.o \
+	$(OBJ_DIR)/io.o \
+	$(OBJ_DIR)/diag.o \
+	$(OBJ_DIR)/alig.o \
+	$(OBJ_DIR)/assemble.o \
+	$(OBJ_DIR)/prob.o \
+	$(OBJ_DIR)/orf.o \
+	$(OBJ_DIR)/translate.o \
+
+
+all: museq
+
+clean:
+	rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx
+
+museq:	$(OBJ)
+	rm -f $(TARGET)/$@
+	$(CC) $(CPPFLAGS) -o $(TARGET)/$@ \
+	$(OBJ) \
+	-pipe -Wall -lm 
+	mv museq dialign-tx

recipes/dialign-tx/build.sh

@@ -1,7 +1,20 @@
 #!/bin/bash
 set -euo pipefail
 
-cd ./source
-mkdir -p $PREFIX/bin
-make CC="$CC -fcommon $CFLAGS $LDFLAGS" CPPFLAGS="$CPPFLAGS"
-mv dialign-tx $PREFIX/bin/
+export CFLAGS="${CFLAGS} -O3 -Wno-unused-command-line-argument -Wno-return-type -Wno-implicit-function-declaration -Wno-format -Wno-unused-comparison"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+mkdir -p ${PREFIX}/bin
+cd source
+
+if [[ `uname` == "Darwin" ]]; then
+	rm Makefile.MAC_OS
+	cp -rf ${RECIPE_DIR}/Makefile.MAC_OS .
+	make -f Makefile.MAC_OS CC="${CC} -fcommon ${CFLAGS} ${LDFLAGS}" CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include" -j"${CPU_COUNT}"
+else
+	rm Makefile
+	cp -rf ${RECIPE_DIR}/Makefile .
+	make -f Makefile CC="${CC} -fcommon ${CFLAGS} ${LDFLAGS}" CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include" -j"${CPU_COUNT}"
+fi
+
+install -v -m 0755 dialign-tx ${PREFIX}/bin

recipes/dialign-tx/meta.yaml

@@ -1,38 +1,42 @@
 {% set version = "1.0.2" %}
 {% set name = "dialign-tx" %}
+
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-#  url: http://dialign-tx.gobics.de/DIALIGN-TX_{{ version }}.tar.gz   -- deceased
   url: https://master.dl.sourceforge.net/project/old-software-collection/DIALIGN-TX_{{ version }}.tar.gz
   sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f
   patches:
     - patch
 
 build:
-  number: 7
+  number: 8
   run_exports:
-    - {{ pin_subpackage(name, max_pin="x.x") }}
-  skip: True     # [osx]
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-  run:
 
 test:
   commands:
     - dialign-tx -h | grep 'Usage'
 
+about:
+  home: "https://dialign.gobics.de"
+  license: "LGPL-2.1-or-later"
+  license_family: LGPL
+  license_file: "LICENSE.TXT"
+  summary: "DIALIGN-TX is a greedy and progressive approaches for segment-based multiple sequence alignment."
+  doc_url: "http://dialign-tx.gobics.de"
+
 extra:
   additional-platforms:
     - linux-aarch64
-
-about:
-  home: https://dialign-tx.gobics.de
-  license: LGPL
-  license_file: LICENSE.TXT
-  summary: DIALIGN-TX is a greedy and progressive approaches for segment-based multiple sequence alignment
+    - osx-arm64
+  identifiers:
+    - doi:10.1093/nar/gkq442
+    - biotools:dialign-tx