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[ci skip] add build failure record for recipe recipes/bioconductor-ba…
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|---|---|---|
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| recipe_sha: 1b44810561201bbd0eafb438197ac935091631d0410548b8318b9f92c9cd44af # The hash of the recipe's meta.yaml at which this recipe failed to build. | ||
| skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above. | ||
| log: |2- | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env | ||
| F90=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| F95=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| FC=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| FC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs) | ||
| FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ | ||
| raise subprocess.CalledProcessError(proc.returncode, _args) | ||
| FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| GFORTRAN=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran | ||
| INFO: activate_clang_osx-64.sh made the following environmental changes: | ||
| subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-bandle_1736185276388/work/conda_build.sh']' returned non-zero exit status 1. | ||
| The above exception was the direct cause of the following exception: | ||
| Traceback (most recent call last): | ||
| File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in <module> | ||
| sys.exit(execute()) | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute | ||
| AR=x86_64-apple-darwin13.4.0-ar | ||
| AS=x86_64-apple-darwin13.4.0-as | ||
| CC=x86_64-apple-darwin13.4.0-clang | ||
| CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| api.build( | ||
| CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms | ||
| CLANG=x86_64-apple-darwin13.4.0-clang | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build | ||
| return build_tree( | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree | ||
| packages_from_this = build( | ||
| File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build | ||
| raise BuildScriptException(str(exc), caused_by=exc) from exc | ||
| conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-bandle_1736185276388/work/conda_build.sh']' returned non-zero exit status 1. | ||
| CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| CMAKE_PREFIX_PATH=:$PREFIX | ||
| CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0 | ||
| CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0 | ||
| CPP=x86_64-apple-darwin13.4.0-clang-cpp | ||
| CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| CPP_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| HOST=x86_64-apple-darwin13.4.0 | ||
| INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool | ||
| LD=x86_64-apple-darwin13.4.0-ld | ||
| LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| LIBTOOL=x86_64-apple-darwin13.4.0-libtool | ||
| LIPO=x86_64-apple-darwin13.4.0-lipo | ||
| MESON_ARGS=-Dbuildtype=release --prefix=$PREFIX -Dlibdir=lib | ||
| NM=x86_64-apple-darwin13.4.0-nm | ||
| NMEDIT=x86_64-apple-darwin13.4.0-nmedit | ||
| OBJC=x86_64-apple-darwin13.4.0-clang | ||
| OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| OTOOL=x86_64-apple-darwin13.4.0-otool | ||
| PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff | ||
| RANLIB=x86_64-apple-darwin13.4.0-ranlib | ||
| REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding | ||
| SDKROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk | ||
| SEGEDIT=x86_64-apple-darwin13.4.0-segedit | ||
| SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table | ||
| SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack | ||
| SIZE=x86_64-apple-darwin13.4.0-size | ||
| STRINGS=x86_64-apple-darwin13.4.0-strings | ||
| STRIP=x86_64-apple-darwin13.4.0-strip | ||
| _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0 | ||
| ac_cv_func_malloc_0_nonnull=yes | ||
| ac_cv_func_realloc_0_nonnull=yes | ||
| build_alias=x86_64-apple-darwin13.4.0 | ||
| host_alias=x86_64-apple-darwin13.4.0 | ||
| INFO: activate_clangxx_osx-64.sh made the following environmental changes: | ||
| CLANGXX=x86_64-apple-darwin13.4.0-clang | ||
| CXX=x86_64-apple-darwin13.4.0-clang | ||
| CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CXX_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| INFO: activate_clang_osx-64.sh made the following environmental changes: | ||
| CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| CPP_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| -CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| -CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| -CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin | ||
| -CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15 | ||
| -CPP_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp | ||
| -DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-bandle-1.10.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix | ||
| -LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib | ||
| -LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib | ||
| -OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| INFO: activate_clangxx_osx-64.sh made the following environmental changes: | ||
| CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| -CXX_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang | ||
| x86_64-apple-darwin13.4.0-clang -std=gnu11 -I"$PREFIX/lib/R/include" -DNDEBUG -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/RcppArmadillo/include' -I'$PREFIX/lib/R/library/BH/include' -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.13 -mmacosx-version-min=10.13 -I$PREFIX/include -fopenmp -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/r-base-split_1734433510517/work=/usr/local/src/conda/r-base-4.4.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -c Bessel2ndKind.cpp -o Bessel2ndKind.o | ||
| # Last 100 lines of the build log. |