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Update eukcc to 2.1.3 (#53659)
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* Update eukcc to 2.1.3

* add run_exports

* Update meta.yaml

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
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BiocondaBot and mencian authored Feb 3, 2025
1 parent f1eca32 commit 50f2733
Showing 1 changed file with 24 additions and 14 deletions.
38 changes: 24 additions & 14 deletions recipes/eukcc/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,37 +1,46 @@
{% set name = "eukcc" %}
{% set version = "2.1.0" %}
{% set version = "2.1.3" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: 135355c2321030db248b84777ad846d60c6236cc117177f6c7c6678ab7c38760
sha256: a70e36789a11c8bd106c260e8079d86c3d0f840173844c16e1000759a93c7505

build:
number: 0
noarch: python
entry_points:
- eukcc = eukcc.__main__:main
script: "{{ PYTHON }} -m pip install . -vv --no-deps"
- shared_markers = eukcc.find_markerset:main
- binlinks = scripts.binlinks:main
- filter_euk_bins = scripts.filter_euk_bins:main
script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir"
run_exports:
- {{ pin_subpackage('eukcc', max_pin="x") }}

requirements:
host:
- pip
- python >=3.6
- python >=3.8
- setuptools
run:
- biopython ==1.83
- configargparse
- ete3
- jsonpickle
- numpy
- python>=3.6
- hmmer=3.3
- epa-ng=0.3.8
- 'metaeuk=4.a0f584d'
- python >=3.8
- hmmer =3.3
- epa-ng =0.3.8
- 'metaeuk =4.a0f584d'
- bwa
- pplacer
- samtools>=1.12
- pysam
- samtools >=1.12
- pysam
- six

test:
imports:
Expand All @@ -40,12 +49,13 @@ test:
- eukcc --help > /dev/null

about:
home: "https://github.com/Finn-Lab/EukCC/"
license: "GNU General Public v3 (GPLv3)"
home: "https://github.com/Finn-Lab/EukCC"
license: "GPL-3.0-or-later"
license_family: GPL3
license_file: LICENSE
summary: "Check eukaryotic genomes or MAGs for completeness and contamination"
doc_url: "https://eukcc.readthedocs.io/en/latest/"
summary: "Check eukaryotic genomes or MAGs for completeness and contamination."
doc_url: "https://eukcc.readthedocs.io/en/latest"
dev_url: "https://github.com/Finn-Lab/EukCC"

extra:
recipe-maintainers:
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