clustalw: add arm64 build (#53702)

recipes/clustalw/build.sh

@@ -1,9 +1,20 @@
 #!/bin/bash
 
+export M4="${BUILD_PREFIX}/bin/m4"
+export CFLAGS="${CFLAGS} -O3"
+export CXXFLAGS="${CXXFLAGS} -O3 -std=c++14"
+export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
 # use newer config.guess and config.sub that support linux-aarch64
-cp ${RECIPE_DIR}/config.* .
+cp -rf ${RECIPE_DIR}/config.* .
+
+autoreconf -if
+./configure --prefix="${PREFIX}" --disable-option-checking \
+	--enable-silent-rules --disable-dependency-tracking \
+	CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" \
+	CXXFLAGS="${CXXFLAGS}" CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}"
 
-mkdir -p ${PREFIX}
-./configure --prefix=$PREFIX
+make -j"${CPU_COUNT}"
 make install
-ln -s ${PREFIX}/bin/clustalw2 ${PREFIX}/bin/clustalw
+ln -sf ${PREFIX}/bin/clustalw2 ${PREFIX}/bin/clustalw

recipes/clustalw/meta.yaml

@@ -1,40 +1,51 @@
+{% set name = "clustalw" %}
+{% set version = "2.1" %}
+
 package:
-  name: clustalw
-  version: 2.1
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: http://www.clustal.org/download/current/clustalw-2.1.tar.gz
-  md5: 144df8440a0ae083d5167616c8ceeb41
+  url: http://www.clustal.org/download/current/{{ name }}-{{ version }}.tar.gz
+  sha256: e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486
   patches:
     - patch  # [osx]
 
 build:
-  number: 11
+  number: 12
   run_exports:
-    - {{ pin_subpackage('clustalw', max_pin="x.x") }}
-
+    - {{ pin_subpackage('clustalw', max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
+    - autoconf
+    - automake
+    - libtool
 
 test:
   commands:
     - clustalw2 H 2>&1 | grep "CLUSTAL 2.1"
     - clustalw H 2>&1 | grep "CLUSTAL 2.1"
 
 about:
-  home: http://www.clustal.org/clustal2/
-  license: "GNU Lesser GPL"
-  summary: ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.
+  home: "http://www.clustal.org/clustal2"
+  license: "LGPL-3.0-or-later"
+  license_family: LGPL
+  license_file: "COPYING.LESSER"
+  summary: "ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins."
+  doc_url: "http://www.clustal.org/download/clustalw_help.txt"
 
 extra:
   additional-platforms:
     - linux-aarch64
-  skip-lints:
-    - should_not_be_noarch_source
+    - osx-arm64
   identifiers:
-    - biotools:trinity
-    - doi:10.1038/nbt.1883
+    - biotools:clustalw_biolib
+    - biotools:ClustalW2_Phylogeny_API_EBI
+    - biotools:clustalw2_phylogeny_ebi
+    - biotools:clustalw2_ebi
+    - doi:10.1093/bioinformatics/btm404
+    - doi:10.1093/nar/22.22.4673
     - usegalaxy-eu:clustalw