Update simpleaf to 0.19.0 (#53475)

* Update simpleaf to 0.19.0

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update build.sh

---------

Co-authored-by: Rob Patro <rob-p@users.noreply.github.com>

recipes/simpleaf/build.sh

@@ -1,15 +1,33 @@
 #!/bin/bash -euo
+
 export CFLAGS="${CFLAGS} -fcommon"
 export CXXFLAGS="${CFLAGS} -fcommon"
 
-if [ "$(uname)" == "Darwin" ]; then
-  export CFLAGS="${CFLAGS} -fno-define-target-os-macros"
-  export CXXFLAGS="${CXXFLAGS} -fno-define-target-os-macros"
+unamestr=`uname`
+
+if [ "$unamestr" == 'Darwin' ];
+then
+  if [[ $(uname -m) == 'x86_64' ]]; then
+    echo "OSX x86-64: attempting to fix broken (old) SDK behavior"
+    export CFLAGS="${CFLAGS} -D_LIBCPP_HAS_NO_C11_ALIGNED_ALLOC -UHAVE_ALIGNED_ALLOC -D__APPLE__"
+    export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_HAS_NO_C11_ALIGNED_ALLOC -UHAVE_ALIGNED_ALLOC -D__APPLE__"
+  fi
+  export MACOSX_DEPLOYMENT_TARGET=10.15
+  export MACOSX_SDK_VERSION=10.15
+  export CFLAGS="${CFLAGS} -fcommon -D_LIBCPP_DISABLE_AVAILABILITY -fno-define-target-os-macros"
+  export CXXFLAGS="${CXXFLAGS} -fcommon -D_LIBCPP_DISABLE_AVAILABILITY"
 fi
 
 # Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
 # We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
-export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+export CARGO_NET_GIT_FETCH_WITH_CLI=true 
+export CARGO_HOME="$(pwd)/.cargo"
 
+if [ "$unamestr" == 'Darwin' ];
+then
 # build statically linked binary with Rust
-RUST_BACKTRACE=1 cargo install --locked --verbose --root $PREFIX --path .
+CONDA_BUILD=TRUE RUSTFLAGS="-C link-args=-Wl,-undefined,dynamic_lookup" RUST_BACKTRACE=1 cargo install -v -v -j 1 --locked --verbose --root $PREFIX --path .
+else 
+# build statically linked binary with Rust
+CONDA_BUILD=TRUE RUSTFLAGS="-L $PREFIX/lib64" RUST_BACKTRACE=1 cargo install -v -v --locked --verbose --root $PREFIX --path .
+fi

recipes/simpleaf/meta.yaml

@@ -1,22 +1,23 @@
-{% set version = "0.18.4" %}
+{% set version = "0.19.0" %}
 
 package:
   name: simpleaf
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage("simpleaf", max_pin="x.x") }}
 
 source:
   url: https://github.com/COMBINE-lab/simpleaf/archive/v{{ version }}.tar.gz
-  sha256: 52f39e264e41bf6d405b3bfcf6e6e968d0b8237cac6d0db5f54e02c658792998
+  sha256: 76347b27a36d0e28cde539a5b5c6261a1a025733dac83cf7889e2104ff8f250b
 
 requirements:
   build:
     - autoconf
     - make
+    - cmake
     - {{ compiler('cxx') }}
     - {{ compiler('rust') }}
     - pkg-config