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Changes to MEDICC2 recipe for version 1.1.2 (#50486)
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tlkaufmann authored Sep 4, 2024
1 parent 303eda0 commit 973b7f6
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104 changes: 0 additions & 104 deletions recipes/medicc2/build_failure.osx-64.yaml

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30 changes: 18 additions & 12 deletions recipes/medicc2/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{% set name = "medicc2" %}
{% set version = "1.1.1" %}
{% set hash = "5ea0368f99d08ed9b4b6cece584f94295c742aeb5391859a4d031a41341285b8" %}
{% set version = "1.1.2" %}
{% set hash = "13cb58099d5e4b79b4169b8ccc8f2543863b1dab0a43fafb5e146bfd9d9adc97" %}


package:
Expand All @@ -13,47 +13,53 @@ source:

build:
number: 0
skip: True # [py < 38 or py >= 311]
run_exports:
- {{ pin_subpackage("medicc2", max_pin="x") }}
script: {{ PYTHON }} -m pip install . -vv
script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv

requirements:
build:
- {{ compiler('c') }}
- {{ compiler("cxx") }}
host:
- python >=3.8,<3.11
- python
- pip
# The following are needed for building the Cython extension
- numpy >=1.20.1
- openfst ==1.8.2
- setuptools
- cython ==0.29.*
- pathlib2
run:
- python >=3.8,<3.11
- python
- numpy >=1.20.1,<2.0
- pyyaml >=5.4.1
- {{ pin_compatible('openfst', max_pin='x.x.x') }}
- pandas >=1.2.2,<2.1
- pandas >=1.2,<2.1
- joblib >=1.0.1
- biopython >=1.78
- scipy >=1.7
- matplotlib-base >=3.3
- matplotlib-base >=3.3.4
- pyranges

test:
commands:
- medicc2 --help

extra:
recipe-maintainers:
- tlkaufmann

about:
home: https://bitbucket.org/schwarzlab/medicc2
license: GPL-3
license: GPL-3.0-or-later
license_family: GPL3
license_file: LICENSE
summary: Whole-genome doubling-aware copy number phylogenies for cancer evolution
description: |
For more information see the accompanying biorxiv preprint "Kaufmann et al. Whole-genome
doubling-aware copy number phylogenies for cancer evolution with MEDICC2."
dev_url: https://bitbucket.org/schwarzlab/medicc2

extra:
recipe-maintainers:
- tlkaufmann
identifiers:
- doi:10.1186/s13059-022-02794-9

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