fastx_toolkit: add linux-aarch64 build

[martin-g]

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[martin-g]

Thank you, @mencian !

[martin-g]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
linux-64	fastx_toolkit-0.0.14-h503566f_13.tar.bz2	linux-64.zip	GitHub Actions	show You may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
osx-64	fastx_toolkit-0.0.14-h5eaf441_13.tar.bz2	osx-64.zip	GitHub Actions	show You may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>
linux-aarch64	fastx_toolkit-0.0.14-h80f0ee0_13.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/7829b3a9-9361-48a2-b875-6eee50ef2464/artifacts/0/tmp/artifacts/packages <package name>

---

Docker image(s) built:

Package	Tag	CI	Install with docker
fastx_toolkit	0.0.14--h503566f_13	GitHub Actions	show Images are in the linux-64 zip file above.gzip -dc images/fastx_toolkit---0.0.14--h503566f_13.tar.gz | docker load

[martin-g]

mgrigorov in 🌐 euler-arm-22 in /tmp/fastx_toolkit took 2s 
❯ tar xvf fastx_toolkit-0.0.14-h80f0ee0_13.tar.bz2 
info/run_exports.json
info/test/run_test.sh
info/hash_input.json
info/index.json
info/recipe/fastx-toolkit-gcc7.patch
info/files
info/recipe/build.sh
info/recipe/fastx.patch
info/recipe/meta.yaml.template
info/recipe/meta.yaml
info/paths.json
info/recipe/conda_build_config.yaml
info/about.json
info/licenses/COPYING
info/git
bin/fastq_quality_boxplot_graph.sh
bin/fastx_nucleotide_distribution_graph.sh
bin/fastx_nucleotide_distribution_line_graph.sh
bin/fastq_quality_converter
bin/fastx_reverse_complement
bin/fastx_artifacts_filter
bin/fastq_to_fasta
bin/fasta_nucleotide_changer
bin/fastx_renamer
bin/fastq_quality_trimmer
bin/fastq_masker
bin/fastx_trimmer
bin/fastq_quality_filter
bin/fastx_quality_stats
bin/fasta_formatter
bin/fastx_uncollapser
bin/fastx_collapser
bin/fastx_clipper
share/aclocal/ax_c_long_long.m4
share/aclocal/ax_cxx_header_stdcxx_tr1.m4
share/aclocal/ax_cxx_compile_stdcxx_11.m4
bin/fasta_clipping_histogram.pl
bin/fastx_barcode_splitter.pl

mgrigorov in 🌐 euler-arm-22 in /tmp/fastx_toolkit 
❯ file ./bin/*
./bin/fasta_clipping_histogram.pl:                 Perl script text executable
./bin/fasta_formatter:                             ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fasta_nucleotide_changer:                    ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastq_masker:                                ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastq_quality_boxplot_graph.sh:              Bourne-Again shell script, ASCII text executable
./bin/fastq_quality_converter:                     ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastq_quality_filter:                        ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastq_quality_trimmer:                       ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastq_to_fasta:                              ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_artifacts_filter:                      ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_barcode_splitter.pl:                   Perl script text executable
./bin/fastx_clipper:                               ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_collapser:                             ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_nucleotide_distribution_graph.sh:      Bourne-Again shell script, ASCII text executable
./bin/fastx_nucleotide_distribution_line_graph.sh: Bourne-Again shell script, ASCII text executable
./bin/fastx_quality_stats:                         ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_renamer:                               ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_reverse_complement:                    ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_trimmer:                               ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
./bin/fastx_uncollapser:                           ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped

mgrigorov in 🌐 euler-arm-22 in /tmp/fastx_toolkit 
❯ ./bin/fasta_formatter -h
usage: fasta_formatter [-h] [-i INFILE] [-o OUTFILE] [-w N] [-t] [-e]
Part of FASTX Toolkit 0.0.14 by assafgordon@gmail.com

   [-h]         = This helpful help screen.
   [-i INFILE]  = FASTA/Q input file. default is STDIN.
   [-o OUTFILE] = FASTA/Q output file. default is STDOUT.
   [-w N]       = max. sequence line width for output FASTA file.
                  When ZERO (the default), sequence lines will NOT be wrapped -
                  all nucleotides of each sequences will appear on a single 
                  line (good for scripting).
   [-t]         = Output tabulated format (instead of FASTA format).
                  Sequence-Identifiers will be on first column,
                  Nucleotides will appear on second column (as single line).
   [-e]         = Output empty sequences (default is to discard them).
                  Empty sequences are ones who have only a sequence identifier,
                  but not actual nucleotides.

Input Example:
   >MY-ID
   AAAAAGGGGG
   CCCCCTTTTT
   AGCTN

Output example with unlimited line width [-w 0]:
   >MY-ID
   AAAAAGGGGGCCCCCTTTTTAGCTN

Output example with max. line width=7 [-w 7]:
   >MY-ID
   AAAAAGG
   GGGTTTT
   TCCCCCA
   GCTN

Output example with tabular output [-t]:
   MY-ID	AAAAAGGGGGCCCCCTTTTAGCTN

example of empty sequence:
(will be discarded unless [-e] is used)
  >REGULAR-SEQUENCE-1
  AAAGGGTTTCCC
  >EMPTY-SEQUENCE
  >REGULAR-SEQUENCE-2
  AAGTAGTAGTAGTAGT
  GTATTTTATAT

LGTM!

[martin-g]

@BiocondaBot please add label