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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| SET sequila.prefer_interval_join TO true; | ||
| SET datafusion.execution.target_partitions=1; | ||
| SET sequila.interval_join_algorithm TO coitrees; | ||
| SET datafusion.optimizer.repartition_joins TO false; | ||
| SET datafusion.execution.coalesce_batches TO false; | ||
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| CREATE EXTERNAL TABLE a | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/chainRn4/*parquet'; | ||
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| CREATE EXTERNAL TABLE b | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/fBrain-DS14718/*parquet'; | ||
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||
| select count(1) from a join b | ||
| on a.contig = b.contig | ||
| and a.pos_end > b.pos_start | ||
| and a.pos_start < b.pos_end; |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| SET sequila.prefer_interval_join TO true; | ||
| SET datafusion.execution.target_partitions=1; | ||
| SET sequila.interval_join_algorithm TO coitrees; | ||
| SET datafusion.optimizer.repartition_joins TO false; | ||
| SET datafusion.execution.coalesce_batches TO false; | ||
|
|
||
| CREATE EXTERNAL TABLE a | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/chainRn4/*parquet'; | ||
|
|
||
| CREATE EXTERNAL TABLE b | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/chainOrnAna1/*parquet'; | ||
|
|
||
| select count(1) from a join b | ||
| on a.contig = b.contig | ||
| and a.pos_end > b.pos_start | ||
| and a.pos_start < b.pos_end; |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| SET sequila.prefer_interval_join TO true; | ||
| SET datafusion.execution.target_partitions=1; | ||
| SET sequila.interval_join_algorithm TO coitrees; | ||
| SET datafusion.optimizer.repartition_joins TO false; | ||
| SET datafusion.execution.coalesce_batches TO false; | ||
|
|
||
| CREATE EXTERNAL TABLE a | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/chainRn4/*parquet'; | ||
|
|
||
| CREATE EXTERNAL TABLE b | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/ex-rna/*parquet'; | ||
|
|
||
| select count(1) from a join b | ||
| on a.contig = b.contig | ||
| and a.pos_end > b.pos_start | ||
| and a.pos_start < b.pos_end; |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| SET sequila.prefer_interval_join TO true; | ||
| SET datafusion.execution.target_partitions=1; | ||
| SET sequila.interval_join_algorithm TO coitrees; | ||
| SET datafusion.optimizer.repartition_joins TO false; | ||
| SET datafusion.execution.coalesce_batches TO false; | ||
|
|
||
| CREATE EXTERNAL TABLE a | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/ex-anno/*parquet'; | ||
|
|
||
| CREATE EXTERNAL TABLE b | ||
| STORED AS PARQUET | ||
| LOCATION '/Users/mwiewior/research/git/openstack-bdg-runners/ansible/roles/gha_runner/files/databio/ex-rna/*parquet'; | ||
|
|
||
| select count(1) from a join b | ||
| on a.contig = b.contig | ||
| and a.pos_end > b.pos_start | ||
| and a.pos_start < b.pos_end; |
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