docker setup for specieslist-webapp with sbdi config

Dockerfile

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+FROM tomcat:9.0-jdk11-temurin
+
+RUN mkdir -p \
+	/data/specieslist-webapp/config
+
+COPY build/libs/specieslist-webapp-*-plain.war $CATALINA_HOME/webapps/ROOT.war
+
+ENV DOCKERIZE_VERSION v0.7.0
+
+RUN apt-get update \
+    && apt-get install -y wget \
+    && wget -O - https://github.com/jwilder/dockerize/releases/download/$DOCKERIZE_VERSION/dockerize-linux-amd64-$DOCKERIZE_VERSION.tar.gz | tar xzf - -C /usr/local/bin \
+    && apt-get autoremove -yqq --purge wget && rm -rf /var/lib/apt/lists/*

docker-compose.yml

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+services:
+
+  mysqldb-specieslist:
+    image: mysql:8.0
+    volumes:
+      - db_data_specieslists:/var/lib/mysql
+      - ./initdb:/docker-entrypoint-initdb.d
+    environment:
+      MYSQL_ALLOW_EMPTY_PASSWORD: 1
+      MYSQL_DATABASE: specieslists
+      MYSQL_USER: specieslists
+      MYSQL_PASSWORD: specieslists
+    ports:
+      - 3306:3306
+
+volumes:
+  db_data_specieslists:

initdb/2_ONLY_FULL_GROUP_BY.sql

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+SET GLOBAL sql_mode=(SELECT REPLACE(@@sql_mode,'ONLY_FULL_GROUP_BY',''));

sbdi/data/config/specieslist-webapp-config.properties

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+# CAS Config
+security.cas.casServerName=https://auth.biodiversitydata.se
+security.cas.casServerUrlPrefix=https://auth.biodiversitydata.se/cas/
+security.cas.loginUrl=https://auth.biodiversitydata.se/cas/login
+security.cas.logoutUrl=https://auth.biodiversitydata.se/cas/logout
+security.cas.appServerName=https://lists.biodiversitydata.se
+security.cas.appServerName=http://localhost:8080
+security.cas.bypass=false
+# Moved from config file to application.groovy use AUTH 3+
+#security.cas.uriFilterPattern={{ specieslist_uri_filter_pattern | default('/admin.*') }}
+#security.cas.uriExclusionFilterPattern={{ specieslist_uri_exclusion_filter_pattern | default('/images.*,/css.*,/js.*') }}
+#security.cas.authenticateOnlyIfLoggedInFilterPattern={{ specieslist_authenticate_only_if_logged_in_filter_pattern | default('/speciesListItem/list,/speciesListItem/list/.*,/speciesListItem/listAuth,/speciesListItem/listAuth/.*') }}
+security.cas.contextPath=
+disableCAS=false
+security.cas.authCookieName=ALA-Auth
+
+#serverURL=https://lists.biodiversitydata.se
+#serverName=https://lists.biodiversitydata.se
+#grails.serverURL=https://lists.biodiversitydata.se
+serverURL=http://localhost:8080
+serverName=http://localhost:8080
+grails.serverURL=http://localhost:8080
+
+#removed configs
+#contextPath=/specieslists
+auth.userDetailsUrl=https://auth.biodiversitydata.se/userdetails/
+security.apikey.check.serviceUrl=https://auth.biodiversitydata.se/apikey/ws/check?apikey=
+security.apikey.header.alternatives=Authorization
+
+# Data Source properties
+dataSource.dbCreate=update
+#dataSource.driverClassName=com.mysql.jdbc.Driver
+dataSource.driverClassName=com.mysql.cj.jdbc.Driver
+dataSource.dialect=org.hibernate.dialect.MySQL8Dialect
+dataSource.url=jdbc\:mysql\://127.0.0.1:3306/specieslists?autoReconnect=true&connectTimeout=0&useUnicode=true&characterEncoding=UTF-8&useSSL=false&allowPublicKeyRetrieval=true
+dataSource.username=specieslists
+dataSource.password=specieslists
+
+collectory.enableSync=true
+registryApiKey=API_KEY
+collectory.baseURL=https://collections.biodiversitydata.se
+downloadLimit=200
+
+biocacheService.baseURL=https://records.biodiversitydata.se/ws
+biocache.baseURL=https://records.biodiversitydata.se
+# Skin and layout
+skin.fluidLayout=false
+skin.layout=main
+skin.favicon=https://static.biodiversitydata.se/favicon.ico
+skin.homeUrl=https://tools.biodiversitydata.se
+termsOfUseUrl=https://www.ala.org.au/about-the-atlas/terms-of-use/
+skin.orgNameLong=Swedish Biodiversity Data Infrastructure
+skin.orgNameShort=SBDI
+
+bieService.baseURL=https://species.biodiversitydata.se/ws
+bie.download=/data/bie-staging/species-list
+bie.nameIndexLocation=/data/lucene/namematching
+namematching.serviceURL=https://namematching-ws.ala.org.au
+logger.baseURL=https://logger.biodiversitydata.se/service
+logger.baseUrl=https://logger.biodiversitydata.se/service
+
+outboundhttp.timeout=8000
+
+fieldGuide.baseURL=
+batchSize=500
+httpTimeoutMillis=60000
+
+speciesNameColumns=scientificname,scientific,sciname,sname,latinname,latin,taxon,taxonname,taxonomic name
+commonNameColumns=commonname,common,vernacular,vernacularname
+ambiguousNameColumns=name
+kingdomColumns=kingdom,regnum
+phylumColumns=phylum,divisio,division
+classColumns=class,classis,clazz,class_,classs
+orderColumns=order,ordo
+familyColumns=family,familia
+genusColumns=genus,genericEpithet,generic epithet
+rankColumns=taxonrank,rank,taxon rank,taxonomicrank,taxonomic rank,linnaean rank
+
+# Header and footer
+headerAndFooter.baseURL=https://static.biodiversitydata.se
+headerAndFooter.version=2
+
+ala.baseURL=https://biodiversitydata.se
+bie.baseURL=https://species.biodiversitydata.se
+bie.searchPath=/search
+spatial.baseURL=https://spatial.biodiversitydata.se
+
+iconicSpecies.uid=
+
+# flag to determine whether a list owner's email address is visibile to a list editor on the list info panel
+ownerVisibleToEditor=false
+
+#oidc related
+security.cas.enabled=true
+security.oidc.enabled=false
+security.oidc.clientId=12345
+#security.oidc.secret=
+#security.oidc.discoveryUri=
+#security.jwt.discoveryUri=
+
+security.jwt.enabled=false
+webservice.jwt=false
+#webservice.jwt-scopes=
+
+userDetails.url=https://auth.biodiversitydata.se/userdetails/
+
+openapi.components.security.oauth2.authorizationUrl=
+openapi.components.security.oauth2.baseUrl=
+openapi.components.security.oauth2.refreshUrl=
+openapi.components.security.oauth2.tokenUrl=
+openapi.terms=
+openapi.contact.email=
+
+publicview.hidePrivateLists=true