fixed bug when copying input files to log dir (#78)

bioforensics · Aug 5, 2024 · 2232a3f · 2232a3f
1 parent fba877a
commit 2232a3f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/lusSTR/workflows/snps.smk b/lusSTR/workflows/snps.smk
@@ -21,7 +21,7 @@ def create_log(log):
     shell("mkdir -p logs/{dt}/input/")
     shell("cp {log} logs/{dt}/strs.log")
     if os.path.isdir(input_name):
-        shell("cp {input_name}/* logs/{dt}/input/")
+        shell("cp {input_name}/*.* logs/{dt}/input/")
     else:
         shell("cp '{input_name}' logs/{dt}/input/")
     shell("cp snp_config.yaml logs/{dt}/")

diff --git a/lusSTR/workflows/strs.smk b/lusSTR/workflows/strs.smk
@@ -79,7 +79,7 @@ def create_log(log):
     shell("mkdir -p logs/{dt}/input/")
     shell("cp {log} logs/{dt}/strs.log")
     if os.path.isdir(input_name):
-        shell("cp {input_name}/* logs/{dt}/input/")
+        shell("cp {input_name}/*.* logs/{dt}/input/")
     else:
         shell("cp '{input_name}' logs/{dt}/input/")
     shell("cp config.yaml logs/{dt}/")