Skip to content

Commit

Permalink
updated test files
Browse files Browse the repository at this point in the history
  • Loading branch information
@rnmitchell
rnmitchell committed Oct 26, 2023
1 parent bb1e395 commit 5133d10
Show file tree
Hide file tree
Showing 5 changed files with 7 additions and 7 deletions.
2 changes: 1 addition & 1 deletion lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1911,7 +1911,6 @@ Kin_pos_1ng_set1 rs543502 3 4 42.0 33.0 75.0
Kin_pos_1ng_set1 rs6671673 4 2 45.0 30.0 75.0
Kin_pos_1ng_set1 rs7176165 4 75.0 75.0
Kin_pos_1ng_set1 rs7706034 1 75.0 75.0
Kin_pos_1ng_set1 N29insA 2 76.0 76.0
Kin_pos_1ng_set1 rs1009930 1 76.0 76.0
Kin_pos_1ng_set1 rs10167782 4 76.0 76.0
Kin_pos_1ng_set1 rs10196560 2 76.0 76.0
Expand Down Expand Up @@ -1949,6 +1948,7 @@ Kin_pos_1ng_set1 rs2723696 1 76.0 76.0
Kin_pos_1ng_set1 rs2816999 4 2 40.0 36.0 76.0
Kin_pos_1ng_set1 rs295340 1 76.0 76.0
Kin_pos_1ng_set1 rs3018845 2 4 44.0 32.0 76.0
Kin_pos_1ng_set1 rs312262906 2 76.0 76.0
Kin_pos_1ng_set1 rs340828 3 1 46.0 30.0 76.0
Kin_pos_1ng_set1 rs369005 2 4 39.0 37.0 76.0
Kin_pos_1ng_set1 rs3923451 4 76.0 76.0
Expand Down
2 changes: 1 addition & 1 deletion lusSTR/tests/data/kinsnps/evidence.csv
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,4 @@
Sample Name Marker Allele 1 Allele 2 Height 1 Height 2
Kin_pos_1ng N29insA 2 76.0
Kin_pos_1ng rs1000022 2 4 176.0 142.0
Kin_pos_1ng rs1000137 4 2 66.0 36.0
Kin_pos_1ng rs10002268 4 365.0
Expand Down Expand Up @@ -4521,6 +4520,7 @@ Kin_pos_1ng rs3117915 1 3 85.0 117.0
Kin_pos_1ng rs3118520 3 554.0
Kin_pos_1ng rs312154 4 3 69.0 51.0
Kin_pos_1ng rs312185 1 2 152.0 146.0
Kin_pos_1ng rs312262906 2 76.0
Kin_pos_1ng rs312272 2 32.0
Kin_pos_1ng rs3124028 4 96.0
Kin_pos_1ng rs3124041 3 221.0
Expand Down
4 changes: 2 additions & 2 deletions lusSTR/tests/data/kinsnps/multiplerefs.csv
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,4 @@
Sample Name Marker Allele 1 Allele 2
Kin_pos_reference N29insA 2 2
Kin_pos_reference rs1000022 2 4
Kin_pos_reference rs1000137 4 2
Kin_pos_reference rs10002268 4 4
Expand Down Expand Up @@ -4521,6 +4520,7 @@ Kin_pos_reference rs3117915 1 3
Kin_pos_reference rs3118520 3 3
Kin_pos_reference rs312154 4 3
Kin_pos_reference rs312185 1 2
Kin_pos_reference rs312262906 2 2
Kin_pos_reference rs312272 2 2
Kin_pos_reference rs3124028 4 4
Kin_pos_reference rs3124041 3 3
Expand Down Expand Up @@ -9235,7 +9235,6 @@ Kin_pos_reference rs999717 1 2
Kin_pos_reference rs999813 4 3
Kin_pos_reference rs9999446 1 3
Kin_pos_reference rs9999662 1 1
Kin_pos_1ng N29insA 2 2
Kin_pos_1ng rs1000022 2 4
Kin_pos_1ng rs1000137 4 2
Kin_pos_1ng rs10002268 4 4
Expand Down Expand Up @@ -13757,6 +13756,7 @@ Kin_pos_1ng rs3117915 1 3
Kin_pos_1ng rs3118520 3 3
Kin_pos_1ng rs312154 4 3
Kin_pos_1ng rs312185 1 2
Kin_pos_1ng rs312262906 2 2
Kin_pos_1ng rs312272 2 2
Kin_pos_1ng rs3124028 4 4
Kin_pos_1ng rs3124041 3 3
Expand Down
2 changes: 1 addition & 1 deletion lusSTR/tests/data/kinsnps/reference.csv
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,4 @@
Sample Name Marker Allele 1 Allele 2
Kin_pos_reference N29insA 2 2
Kin_pos_reference rs1000022 2 4
Kin_pos_reference rs1000137 4 2
Kin_pos_reference rs10002268 4 4
Expand Down Expand Up @@ -4521,6 +4520,7 @@ Kin_pos_reference rs3117915 1 3
Kin_pos_reference rs3118520 3 3
Kin_pos_reference rs312154 4 3
Kin_pos_reference rs312185 1 2
Kin_pos_reference rs312262906 2 2
Kin_pos_reference rs312272 2 2
Kin_pos_reference rs3124028 4 4
Kin_pos_reference rs3124041 3 3
Expand Down
4 changes: 2 additions & 2 deletions lusSTR/tests/data/kinsnps/snps_kin_all.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -10225,6 +10225,8 @@ Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs3124028 0 G G Kintelligence Contains untyped allele
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312272 32 C C Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312272 10 T T Kintelligence Contains untyped allele
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312262906 76 C C Phenotype
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312262906 0 A A Phenotype Contains untyped allele
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312185 152 A A Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312185 146 C C Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs312154 69 T T Kintelligence
Expand Down Expand Up @@ -20075,5 +20077,3 @@ Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs100
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000137 36 C C Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000022 176 C C Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method rs1000022 142 T T Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method N29insA 76 C C Kintelligence
Kin_pos_reference Kintelligence Test Verogen Kintelligence Analysis Method N29insA 0 A A Kintelligence Contains untyped allele

0 comments on commit 5133d10

Please sign in to comment.