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fixed marker.py
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rnmitchell committed Dec 29, 2023
1 parent 457b87a commit 57c0647
Showing 1 changed file with 0 additions and 7 deletions.
7 changes: 0 additions & 7 deletions lusSTR/scripts/marker.py
Original file line number Diff line number Diff line change
Expand Up @@ -390,13 +390,6 @@ def convert(self):
break_point = self.uas_sequence.index("GGGCTGCCTA") + 10
else:
break_point = self.uas_sequence.index("TTTT") + 14
# for m in re.finditer("GGGCTGCCTA", self.uas_sequence):
# break_point = m.end()
# try:
# break_point
# except NameError:
# for m in re.finditer("TTTT", self.uas_sequence):
# break_point = m.end() + 10
bracketed_form = (
f"{collapse_repeats_by_length(self.uas_sequence[:break_point], 4)} "
f"{collapse_repeats_by_length(self.uas_sequence[break_point:], 4)}"
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