updated filter script from real_allele to Typed

bioforensics · Sep 24, 2024 · c496e7f · c496e7f
1 parent cdb411b
commit c496e7f
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/lusSTR/cli/gui.py b/lusSTR/cli/gui.py
@@ -701,9 +701,7 @@ def show_STR_page():
                 f"{st.session_state.output}_custom_range"
             )
         else:
-            file = (
-                f"{wd_dirname}/{st.session_state.output}/{st.session_state.output}"
-            )
+            file = f"{wd_dirname}/{st.session_state.output}/{st.session_state.output}"
         try:
             sequence_info = pd.read_csv(f"{file}_sequence_info.csv")
             interactive_setup(sequence_info, file)

diff --git a/lusSTR/wrappers/filter.py b/lusSTR/wrappers/filter.py
@@ -368,7 +368,7 @@ def make_plot(df, sample_id, sameyaxis=False, filters=False, at=True):
     sample_df = df[df["SampleID"] == sample_id].copy()
     # sample_id = f"{id}_sexchr" if sex else id
     conditions = [
-        sample_df["allele_type"].str.contains("real"),
+        sample_df["allele_type"].str.contains("Typed"),
         sample_df["allele_type"].str.contains("BelowAT"),
         sample_df["allele_type"].str.contains("stutter"),
     ]