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fixed test
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rnmitchell committed Oct 18, 2023
1 parent 8168318 commit ff4174e
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion lusSTR/tests/test_snps.py
Original file line number Diff line number Diff line change
Expand Up @@ -244,7 +244,7 @@ def test_snp_bins(tmp_path):
def test_uas_version5(tmp_path):
input_sample = data_file("NA24385 Sample Report 2023_09_07_15_11_11.xlsx")
exp_out = data_file("kinsnps/uasversion_snp_evidence.csv")
obs_out = str(tmp_path / "kin_v5_snps_evidence.csv")
obs_out = str(tmp_path / "kin_v5_snp_evidence.csv")
arglist = [
"config",
"-w",
Expand All @@ -259,3 +259,4 @@ def test_uas_version5(tmp_path):
lusSTR.cli.main(lusSTR.cli.get_parser().parse_args(arglist))
all_arglist = ["snps", "all", "-w", str(tmp_path)]
lusSTR.cli.main(lusSTR.cli.get_parser().parse_args(all_arglist))
assert filecmp.cmp(exp_out, obs_out) is True

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