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Custom PowerSeq Ranges #75

Merged
merged 22 commits into from
Jul 8, 2024
Merged

Custom PowerSeq Ranges #75

merged 22 commits into from
Jul 8, 2024

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rnmitchell
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For validation efforts, custom ranges will be used for PowerSeq sequences. Depending on available NIST allele frequency data and entire PowerSeq sequence ranges, each marker will either report the full ISFG range or only the repeat region.

A new column will need to be created during the lusstr convert step, containing the sequence with the specified range, as these will be formatted for use in STRmix NGS only.

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rnmitchell commented Jun 18, 2024

New columns Custom_Range_Sequence and Custom_Bracketed_Notation are created using the custom range. The new bracketed notation is customized for each marker. These are the columns that will be used moving forward through the filter step.

@rnmitchell rnmitchell marked this pull request as ready for review July 3, 2024 16:35
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@standage standage left a comment

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Looks good, no concerns!

@standage standage merged commit 4559739 into master Jul 8, 2024
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@standage standage deleted the custom_ranges branch July 8, 2024 14:10
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2 participants