Fix test suite #143
Workflow file for this run
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| name: CI Build | |
| defaults: | |
| run: | |
| shell: bash -l {0} # Critical for activating Conda environment | |
| on: | |
| push: | |
| schedule: | |
| - cron: '0 4 1 * *' | |
| jobs: | |
| build: | |
| name: PyTaxonKit Build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.8" | |
| - os: ubuntu-latest | |
| python-version: "3.9" | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| # - os: macos-latest | |
| # python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: environment.yaml | |
| - name: Taxonomy data download | |
| run: | | |
| mkdir ~/.taxonkit | |
| pushd ~/.taxonkit | |
| curl -L -O https://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz | |
| tar -xzf taxdump.tar.gz | |
| popd | |
| - name: Install | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| make devenv | |
| - name: Style check | |
| run: | | |
| make style | |
| - name: Test with pytest | |
| run: | | |
| make testci |