spatial extension v1

[pfeiferl]

Hey guys, I just finished a new spatial extension for scdrake, especially focusing on data generated by Visium technology. Features added: spatial pseudo-tissue visualization, spatially variable genes selection, and manual annotation using expression signatures (for both single-cell and spatial data). Please, kindly review these sections once you have time. I hope everything will work fine this time. Thank you!

[vucinick]

Hi,

I started the review a week ago and noted several comments regarding semantics. I recommended to Lucie (@pfeiferl) to use the lintr package, which will allow me to focus more on the logic of the code. Writing this here to document our in-person discussion.

Thanks! 😃

[pfeiferl]

Hi,

thank you! As suggested, I formatted the code (but used styler as recommended by @gorgitko). I am now waiting for the finished patch by @vucinick, then I will merge the pipelines, and push changes ☺️