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Fix mistake in README.md docs #281

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Feb 29, 2024
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Fix mistake in README.md docs #281

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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -323,9 +323,9 @@ files (which also have to be of same length). In the case of conflicting taxon
identifiers for a classified read in both input files, `kaiju-mergeOutputs` will use the identifier found in the
first input file (specified by `-i`). This behavior can be changed using the
`-c` option, which can take four possible values:
- `1`: use taxon identifier from the first input file (default)
- `2`: use taxon identifier from the second input file
- `lca`: use the least common ancestor of the taxon identifiers from both files.
- `1`: use taxon identifier from the first input file.
- `2`: use taxon identifier from the second input file.
- `lca`: use the least common ancestor of the taxon identifiers from both files (default).
- `lowest`: use the lowest ranking of the two taxon identifiers if they are within the same lineage. Otherwise use the LCA.

Options `lca` and `lowest` require the path to the file `nodes.dmp` by using the `-t` option.
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