RAD-seq analysis

Scripts for software install, assembly, and analysis of RAD-seq data

ipyrad

Complete software documentation here

• ipyrad_install.txt: code for ipyrad software installation
  • customized for JetStream BioLinux instances
  • installs Miniconda, ipyrad, and dependencies
• The following scripts set up project directories, download data, and assemble data using ipyrad:
  • ipyrad_tutorial.sh: script for introductory tutorial using simulated data
  • ipyrad_hibiscus.sh: script for assembly of three empirical samples