build based on 3021e49

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.8.5","generation_timestamp":"2025-01-05T02:52:23","documenter_version":"1.8.0"}}
+{"documenter":{"julia_version":"1.8.5","generation_timestamp":"2025-01-06T02:52:03","documenter_version":"1.8.0"}}

dev/man/fastphase_hmm/fastphase_hmm/index.html

@@ -186,4 +186,4 @@
 power_plot = plot(FDR, empirical_power, xlabel="Target FDR", ylabel="Empirical power", legend=false)
 fdr_plot = plot(FDR, empirical_fdr, xlabel="Target FDR", ylabel="Empirical FDR", legend=false)
 Plots.abline!(fdr_plot, 1, 0, line=:dash)
-plot(power_plot, fdr_plot)</code></pre><p><img src="../output_19_0.png" alt="png"/></p><p>Observe that</p><ul><li>LASSO + knockoffs controls the false discovery rate at approximately the target (dashed line). If we repeat the simulation multiple times, the empirical FDR should average out to be slightly below the target level.</li><li>The power of LASSO + knockoffs is lower than standard LASSO</li></ul></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Sunday 5 January 2025 02:52">Sunday 5 January 2025</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(power_plot, fdr_plot)</code></pre><p><img src="../output_19_0.png" alt="png"/></p><p>Observe that</p><ul><li>LASSO + knockoffs controls the false discovery rate at approximately the target (dashed line). If we repeat the simulation multiple times, the empirical FDR should average out to be slightly below the target level.</li><li>The power of LASSO + knockoffs is lower than standard LASSO</li></ul></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 6 January 2025 02:52">Monday 6 January 2025</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/fixed/fixed/index.html

@@ -163,4 +163,4 @@
   0.617052 seconds (102 allocations: 22.303 MiB)
   0.885246 seconds (835 allocations: 46.493 MiB)
   0.536176 seconds (102 allocations: 22.303 MiB)
-  0.872704 seconds (835 allocations: 46.127 MiB, 0.15% gc time)</code></pre><p><img src="../output_15_1.png" alt="png"/></p><p><strong>Conclusion:</strong> </p><ul><li>Regular Lasso has good power but nearly 50% of all discoveries are false positives. </li><li>Knockoffs + Lasso controls the false discovery rate at below the target (dashed line)</li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../../">« Home</a><a class="docs-footer-nextpage" href="../../modelX/modelX/">Model-X Knockoffs »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Sunday 5 January 2025 02:52">Sunday 5 January 2025</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  0.872704 seconds (835 allocations: 46.127 MiB, 0.15% gc time)</code></pre><p><img src="../output_15_1.png" alt="png"/></p><p><strong>Conclusion:</strong> </p><ul><li>Regular Lasso has good power but nearly 50% of all discoveries are false positives. </li><li>Knockoffs + Lasso controls the false discovery rate at below the target (dashed line)</li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../../">« Home</a><a class="docs-footer-nextpage" href="../../modelX/modelX/">Model-X Knockoffs »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 6 January 2025 02:52">Monday 6 January 2025</span>. Using Julia version 1.8.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>