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This PR adds an initial ClinicalTrials.gov source. Currently, it gets information from:
There are lots more things to do to parse content out of here, but PyOBO typically is not a full data science workflow that also incorporates information extraction, so some things will get left out for now.
The OBO, OFN, and OWL artifacts from build are available at https://github.com/biopragmatics/obo-db-ingest/tree/main/export/clinicaltrials. Here's some example stanzas from the OBO output:
Note that it uses ad-hoc terms and relations, this is being discussed in obi-ontology/obi#1831.
It would also be nice to have a way of annotating phases, which have the following statistics over the database: