feat: updated to pyBioNetGen 0.7.2

biosimulators · Mar 26, 2022 · 8c4f72a · 8c4f72a
1 parent e8960a6
commit 8c4f72a
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/biosimulators_utils/model_lang/bngl/utils.py b/biosimulators_utils/model_lang/bngl/utils.py
@@ -161,7 +161,7 @@ def get_parameters_variables_outputs_for_simulation(model_filename, model_langua
                 raise ValueError((
                     'Sample times (`sample_times`) must be a non-empty array of floats '
                     'greater than or equal to the simulation start time (`t_start`).'
-                ))
+                ))  # pragma: no cover; caught by BioNetGen's own validation
             sample_times = sorted([float(sample_time.strip()) for sample_time in args['sample_times'][1:-1].strip().split(',')])
             output_start_time = sample_times[0]
             output_end_time = sample_times[-1]

diff --git a/requirements.optional.txt b/requirements.optional.txt
@@ -1,7 +1,7 @@
 #################################
 ## Model languages
 [bngl]
-bionetgen >= 0.4.7
+bionetgen >= 0.7.2
 
 [cellml]
 libcellml

diff --git a/tests/model_lang/bngl/test_bngl_utils.py b/tests/model_lang/bngl/test_bngl_utils.py
@@ -135,7 +135,7 @@ def test_get_parameters_variables_for_simulation_with_sample_times(self):
         self.assertEqual(sims[0].number_of_steps, 4)
 
     def test_get_parameters_variables_for_simulation_with_empty_sample_times(self):
-        with self.assertRaisesRegex(ValueError, 'must be a non-empty array'):
+        with self.assertRaisesRegex(ValueError, 'failed to parse action'):
             get_parameters_variables_outputs_for_simulation(os.path.join(self.FIXTURE_DIRNAME, 'empty-sample-times.bngl'),
                                                             None, UniformTimeCourseSimulation, None)