Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
biosinodx authored Dec 17, 2018
1 parent 7e44796 commit 0f98227
Showing 1 changed file with 13 additions and 1 deletion.
14 changes: 13 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
@@ -1,17 +1,29 @@
# EARDiG
Enrichment in ARD-associated GWAS (EARDiG)

Version 1.0.0

Updated date: 2018.12.17

## Authors and License
Author: Xiao Dong

Email: biosinodx@gmail.com, xiao.dong@einstein.yu.edu

Licensed under the GNU Affero General Public License version 3 or later

## Usage
Rscript EARDiG.R workingdir projectname inputgenelist.txt backgroundgenelist.txt repeattime diseaseclass
workingdir: e.g. ./

Workingdir: e.g. ./

Projectname: anyname, e.g. test

Inputgenelist.txt: file name and its root of an input gene list, should be tab limited file with header, the first colunmn is the gene names of interest.

Backgroundgenelist.txt: file name and its root of an input background gene list, should be tab limited file with header, the first colunmn is the gene names of interest, 2rd colunmn gene start, 3rd colunmn gene end; (e.g. By Xiao Dong, for protein coding genes, as in the depository "./resource/background_genelist.txt")

Repeattime: recommend 2000

Diseaseclass: file name and its root of a predefined disease - gene classes; (e.g. by Simon C Johnson as in the depository "./resource/diseasecat_simon_agingcell_2015.RData")

0 comments on commit 0f98227

Please sign in to comment.