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@biosustain

DTU Biosustain

The Novo Nordisk Foundation Center for Biosustainability

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  1. potion potion Public

    Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    Python 488 51

  2. cameo cameo Public

    cameo - computer aided metabolic engineering & optimization

    Python 114 44

  3. shu shu Public

    Multi-dimensional, trans-omics metabolic maps.

    Rust 44 1

  4. croissance croissance Public

    Tool for estimating growth rates from microbial growth curves

    Python 28 13

  5. Maud Maud Public

    Enzyme models that take into account kinetics, allostery and thermodynamics

    Python 27 2

  6. snakemake_UmetaFlow snakemake_UmetaFlow Public

    Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

    Python 24 8

Repositories

Showing 10 of 124 repositories
  • Growth-coupling-suite Public

    A constraint-based metabolic model-based workflow for computing and analyzing microbial strain design which couple a target reaction to growth

    biosustain/Growth-coupling-suite’s past year of commit activity
    Python 3 MIT 1 1 0 Updated Dec 23, 2024
  • pankb Public

    The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for 8 major biotech bacteria families.

    biosustain/pankb’s past year of commit activity
    HTML 2 MIT 0 0 0 Updated Dec 20, 2024
  • benchling-resources Public

    Benchling resources created at DTU Biosustain.

    biosustain/benchling-resources’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 16, 2024
  • pankb_data_prep Public
    biosustain/pankb_data_prep’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 13, 2024
  • pankb_llm Public

    An LLM-based pangenomics chatbot integrated into the PanKB website.

    biosustain/pankb_llm’s past year of commit activity
    Python 0 0 0 0 Updated Dec 11, 2024
  • pankb_db Public
    biosustain/pankb_db’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 10, 2024
  • Alleleome Public

    Tools to generate core- and panalleleomes.

    biosustain/Alleleome’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 5, 2024
  • snakemake_UmetaFlow Public

    Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

    biosustain/snakemake_UmetaFlow’s past year of commit activity
    Python 24 Apache-2.0 8 2 1 Updated Dec 2, 2024
  • dsp_pandas Public

    Organize pandas based functionality across projects.

    biosustain/dsp_pandas’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 28, 2024
  • pseudobatch Public

    The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor.

    biosustain/pseudobatch’s past year of commit activity
    Jupyter Notebook 7 MIT 0 3 0 Updated Nov 28, 2024
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