try to optimize large outputs trying to fit tests in GitHub actions

boulardlab · Mar 11, 2024 · 17cc377 · 17cc377
1 parent be557f4
commit 17cc377
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Showing 3 changed files with 4 additions and 1 deletion.
diff --git a/tests/profile/config.yaml b/tests/profile/config.yaml
@@ -4,3 +4,4 @@ singularity-args: ""
 show-failed-logs: True
 cores: 2
 conda-cleanup-pkgs: cache
+all-temp: True
diff --git a/workflow/rules/star.smk b/workflow/rules/star.smk
@@ -109,7 +109,7 @@ rule star:
          {params.others} |& \
          tee {log}
 
-
+         rm -r {params.alignments_folder}/{wildcards.serie}/*_STAR*
          [[ -d $TMP_FOLDER ]] && rm -r $TMP_FOLDER || exit 0
          """
 

diff --git a/workflow/rules/starTE.smk b/workflow/rules/starTE.smk
@@ -54,6 +54,7 @@ rule starTE_random:
             --outBAMcompression -1 |& \
          tee {log}
 
+         rm -r {params.alignments_folder}/{wildcards.serie}/*_STAR*
          [[ -d $TMP_FOLDER ]] && rm -r $TMP_FOLDER || exit 0
          """
 
@@ -205,6 +206,7 @@ rule starTE_multihit:
             --outBAMcompression -1 |& \
          tee {log}
 
+         rm -r {params.alignments_folder}/{wildcards.serie}/*_STAR*
          [[ -d $TMP_FOLDER ]] && rm -r $TMP_FOLDER || exit 0
          """