wire the new rule to STAR genome prep rule, add missing bash env

boulardlab · Aug 4, 2023 · 3cae75e · 3cae75e
1 parent 4291670
commit 3cae75e
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diff --git a/workflow/env/bash.yml b/workflow/env/bash.yml
@@ -0,0 +1,4 @@
+channels:
+  - conda-forge
+dependencies:
+  - bash=5.1.16
diff --git a/workflow/rules/star.smk b/workflow/rules/star.smk
@@ -36,6 +36,7 @@ rule star_genome_preparation:
     input:
         genome_fasta_file=fasta_path,
         genome_annotation_file=gtf_path,
+        references_folder.joinpath("genome-and-annotation-validated.done")
     output:
         directory(references_folder.joinpath("STAR")),
     params: