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@ftabaro ftabaro released this 11 Mar 20:53
v1.0.1
06b3aae
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1.0.1 (2024-03-06)

Features

  • add example Slurm configuration (96ce038)
  • decouple TE, tRNA and single copy genes pipelines. Allow users to decide which branches to run.#3 (d3b12e4)
  • describe how to run tests (46e023f)
  • DESeq2 reference is now separate for each sequencing library (b4cf102)

Bug Fixes

  • allow deseq2 ananlysi with different variables and different levels (76c2562)
  • fix deseq2 scripts to look for correct column names (ffc4537)
  • fix problem with SalmonTE quant input array on single-end libraries (3fd51ff)
  • fix Snakemake version to be below 8 (5fa9be3)
  • look for correct column name in edit_conditions_file.py (e60456e)
  • make test dataset smaller to let it run in GH Actions (17ac70d)
  • pin all conda packages versions (feddd48)
  • remove params.mem_mb from starTE rules (b6f1848)
  • restore test profile (c50b75e)
  • revert alpine base for SalmonTE Docker (bfb4a48)
  • switch to miniconda3-alpine as base (7ac38c7)
  • test config now has library-specific deseq2 reference level (44d4b43)
  • typo (6e64c84)
  • update docs (c811991)

Miscellaneous Chores

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