Use ruff for formatting, apply formatting #410

	name: Test and lint

	on:
	# Run each time we push and pull requests
	push:
	pull_request:

	concurrency:
	group: ${{ github.ref }}
	cancel-in-progress: true

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: true
	matrix:
	python-version: ["3.9", "3.10", "3.11"]
	os: [ubuntu-latest]

	steps:
	- name: Checkout repo
	uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Setup prerequisites
	run: sudo apt update &&
	sudo apt install -y libhdf5-serial-dev
	netcdf-bin
	libnetcdf-dev
	libsm6
	libxext6
	libxrender-dev
	libxt6
	libgl1-mesa-glx
	libfontconfig
	libxkbcommon-x11-0

	- name: Install dependencies
	run: \|
	pip install .[tests]

	- name: Test local run
	run: \|
	pytest -v

	- name: Upload to codecov
	run: \|
	pip install codecov
	codecov

	lint:
	runs-on: ubuntu-latest
	if: always()

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install ruff
	# Update output format to enable automatic inline annotations.
	- name: Run Ruff
	run: ruff check --output-format=github .

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