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Add bout-upgrader tool #111

Merged
merged 82 commits into from
Sep 30, 2024
Merged

Add bout-upgrader tool #111

merged 82 commits into from
Sep 30, 2024

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ZedThree
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v4 and v5 upgrader scripts moved from bout-dev repo and into top-level package here. Converted to use a single entry point `bout-upgrader

ZedThree and others added 30 commits September 11, 2024 15:57
@ZedThree
Add tool for updating v4 factory uses to v5 style
d871cc1
@ZedThree
Add LaplaceXZ to factory-upgrader helper script
ef2eae8
@ZedThree
Add InvertPar to factory-upgrader helper script
1a3ef9b
@ZedThree
Catch static variables with zero initialisation in factory upgrader
43ecd30
@ZedThree
Add Mesh to factory updater
b50ca68
@ZedThree
Add InterpolationFactory to factory upgrader
5d3e07b
@ZedThree
Add format-upgrader to replace printf formats with fmt formats
0db1788
@ZedThree
Make format upgrader fix uses of {:s} with std::string::c_str
b652493
@ZedThree
Add formats with width specifier to v5 format fixer
4dd3a7d
@ZedThree
Fix all BoutException calls in library
d1f83bc
@ZedThree
Fix uses of toString().c_str() with formatting
59727bb
@ZedThree
Add updater for Interpolation -> XZInterpolation types
9da6d86
@ZedThree
Add input file upgrader for v4 -> v5
d9a2548 
Currently just "canonicalises" input files and adds "bout_version" option
@ZedThree
Add input replacements for paralleltransform changes
b8836a6
@ZedThree
Fix typo in input file upgrader
8dc28dd
@ZedThree
Add 4to5 macro updater script
e4efa55
@ZedThree
Move bout::version::revision into standalone file
af193d5 
Makefile-build system now also configures this file to include the
commit from configure-time, so that bout::version::revision will
always have a meaningful value even if -DBOUT_REVISION is not passed
on command line
@ZedThree
Write comments using '#' in BoutOptions
720ac0d 
Canonical form for v5
@ZedThree
Fix uncompiled parts of #ifdef blocks in macro upgrader
cec0075
@ZedThree
Add renamed feature macros to bout-v5-macro-upgrader
435e885
@ZedThree
Fix a couple of uses of renamed macros
b0f6e50
@ZedThree
Consider underscores as word boundaries when updating macros
2ee94f8
@ZedThree
Fix bug with default file format when using legacy netcdf
e5764ed
@ZedThree
Add fixer for change of factory create method name
dd0b505
@ZedThree
Add warning in upgrader if factory arguments have changed
a58540d
@johnomotani @ZedThree
Option to update values in bout-v5-input-file-upgrader.py
5f322fd
@johnomotani @ZedThree
Deprecate fft_measure option
d24b391 
Only keep fft_measurement_flag.
@johnomotani @ZedThree
Handle bool-like expressions in the same way as BOUT++
4bf3484
@ZedThree
Add tool to upgrade legacy models
363e1c3
@ZedThree
Catch (some) invalid names in physics model upgrader
8c8851b
ZedThree and others added 24 commits September 11, 2024 15:57
@ZedThree
Add some comments to physics model upgrader
299f0a4 
[skip ci]
@ZedThree
Remove some now obsolete input options for DataFile
8c9fe1b
@ZedThree
Add tool to move headers under include/bout and fix #includes
6f1585c 
Replaces similar bash tool
@bendudson @ZedThree
Update bin/bout-v5-header-upgrader.py
f83cadb
@ZedThree
Pull out duplicated code from upgrader scripts
050131a
@ZedThree
Move upgrader scripts from BOUT-dev repo to boututils
b3547d7
@ZedThree
Add upgrader scripts as subcommands of top-level bout-upgrader
7fe4f04
@ZedThree
Move import of boutdata into function to avoid circular dependency
cf58eca
@ZedThree
Apply black
050437e
@ZedThree
Move upgrader script to own package
1ac8499
@ZedThree
Remove execute permissions from individual upgrader modules
960b69b
@ZedThree
Remove unneeded function
2f8df50
@ZedThree
Sort headers
5ac848b
@ZedThree
Replace .format with f-strings
1e38d87
@ZedThree
Remove default open flags
c835b75
@ZedThree
Use generator in place of tuple
b728c86
@ZedThree
Group v5 upgrade subcommands
24a1386
@ZedThree
Add version argument to bout-upgrader
f948fc2
@ZedThree
Add tool to help with updating files from v3 to v4
14c7dc3
@ZedThree
Use mesh->coordinates() instead of coords in 3to4
5f3d19e 
Slightly uglier, but resulting file doesn't need additional lines
manually adding
@ZedThree
Enable bout_3to4 to check 2D subscripts
5bbe434
@loeiten @ZedThree
Added ng@ -> LocalN@ replacement
3f35847 
As a sidenote, the following replacements would be handy, but was not
implemented in this commit

    a^b -> pow(a,b)
    Field3D.max(bool_or_NULL) -> max(Field3D, bool_or_NULL
@loeiten @ZedThree
Changed ngz to warning, added more warnings
4969437
@ZedThree
Move bout_3to4 into boutupgrader structure
b66b192
@ZedThree ZedThree mentioned this pull request Sep 12, 2024
Closed
@ZedThree ZedThree merged commit bfd3ca0 into master Sep 30, 2024
9 checks passed
@ZedThree ZedThree deleted the upgrader-script branch September 30, 2024 15:12
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4 participants
@ZedThree @johnomotani @bendudson @loeiten