Skip to content

Issues: bowang-lab/scGPT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

124 Open 125 Closed
124 Open 125 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Updating repo
#286 opened Feb 5, 2025 by DanielFLevine
Bad performance on gene value prediction
#285 opened Jan 28, 2025 by Thodorissio
Dependency Conflict with scGPT Installation in Colab: Versions 0.1.3 and 0.1.5
#284 opened Jan 28, 2025 by victoriaktruong
1
How to use the mvc decoder at test-time?
#283 opened Jan 25, 2025 by syr-cn
1
AttributeError: Can't pickle local object 'get_batch_cell_embeddings..Dataset'
#282 opened Jan 23, 2025 by thinkCodeai
Are Zero-Shot Cell Embeddings Dependent on Input Sample Chunk Size & max_length?
#281 opened Jan 20, 2025 by peterhealx
Installation issue
#279 opened Jan 3, 2025 by zhenlyu
2
poetry install problem - unable to find installation candidates for jaxlib
#278 opened Jan 2, 2025 by amina11
1
High Similarity in Predictions Across Perturbation Conditions
#277 opened Dec 31, 2024 by ellieujin
2
Inquiry on Best Practices for DEG Analysis Using scGPT Model Outputs
#276 opened Dec 31, 2024 by ellieujin
Request for Checkpoints for Each Downstream Task (e.g., Perturbation)
#275 opened Dec 7, 2024 by JunyanReplicant
pre-training using cell prompt
#274 opened Nov 27, 2024 by matsunokentaro
CellXGene census 2024-07-01 NA values?
#273 opened Nov 24, 2024 by rpeys
Inconsistent Data Preprocessing in Tutorial_ZeroShot_Integration.ipynb
#270 opened Nov 14, 2024 by nc1m
2
Code for testing the model on the Adamson and Replogle datasets
#265 opened Oct 23, 2024 by gefeiwang
1
what's the "loss_gen" during pre-training stage
#264 opened Oct 21, 2024 by lishensuo
Census VERSION is not valid in cellxgene/data_config.py
#263 opened Oct 16, 2024 by Fredrick-Kakembo
1
Cell Type Classification Datasets
#262 opened Oct 3, 2024 by nc1m
1
Issue on Tutorial Annotation - UMAP is not from Learned Cell Embeddings
#259 opened Sep 24, 2024 by ManuelSokolov
2
Code to pretrain model from scratch on my own dataset
#257 opened Sep 23, 2024 by igor-sadalski
1
Assistance Needed with Adding Cell-Type Column to h5ad File for scGPT Hub Submission
#256 opened Sep 19, 2024 by msyed786
1
Unable to resolve dependencies when fixing the lock file in developer mode
#255 opened Sep 17, 2024 by igor-sadalski
2
TypeError: bwd(): incompatible function arguments.
#253 opened Sep 17, 2024 by IchigoJiken
link to raw data origin of Immune Human dataset
#252 opened Sep 16, 2024 by talbCgen
Why is X not standarized using the preprocess() funnction in Tutorial_Reference_Mapping.ipynb?
#251 opened Sep 15, 2024 by Ale9806
ProTip! Add no:assignee to see everything that’s not assigned.