APS Within-Set ID Creation - Initial Fuzzy-Match Chunk Generation

[corvidfox]

Brief Summary of Commits:
QMD Files

• data_unique_person_01_aps_01_cleaning.qmd
  • Final updates to prep and clean of APS data subject identifier data file
  • File renamed for organization, and to more closely follow SOP. Originally called "data_unique_person_01_within_set_aps.qmd"
• data_unique_person_01_aps_02_fl_chunk_generation.qmd
  • Performs benchmarking and exploration of fastLink processing of data
  • Due to size of data file, 5 chunks were required and created
  • Manual review posterior probability range of 0.10 - 0.80 (approximately 0.027% of the benchmarking chunk)
  • APS data was exported with modifications made in this file, for use in further processing of each chunk

R Scripts of Helper Functions

• single_df_fastlink.R
  • Wrapper function to facilitate fastLink processing for within-set fuzzy matching, without tripping auto-modifications otherwise made in the algorithm that deduplicate or otherwise limit returned data
• get_pair_data.R
  • Extracts data from the fastLink output object to facilitate within-row comparison of identifiers in each pair
• stack_ids.R
  • Modifies output from get_pair_data.R to assign unique group IDs for clustered pairs, acting as a preliminary unique Subject ID