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2 changes: 1 addition & 1 deletion Chapter_1.html
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Expand Up @@ -707,7 +707,7 @@ <h3>References<a href="references.html#references" class="anchor-section" aria-l
Friedlingstein, P., O’Sullivan, M., Jones, M. W., Andrew, R. M., Gregor, L., Hauck, J., Le Quéré, C., Luijkx, I. T., Olsen, A., Peters, G. P., Peters, W., Pongratz, J., Schwingshackl, C., Sitch, S., Canadell, J. G., Ciais, P., Jackson, R. B., Alin, S. R., Alkama, R., … Zheng, B. (2022). Global carbon budget 2022. <em>Earth System Science Data</em>, <em>14</em>(11), 4811–4900. <a href="https://doi.org/10.5194/essd-14-4811-2022">https://doi.org/10.5194/essd-14-4811-2022</a>
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Gotelli, N. J. (2001). <em><span class="nocase">A Primer of Ecology</span></em> (3rd ed., p. 265). Sinauer Associates, Inc., Sunderland, Massachusetts.
Gotelli, N. J. (2001). <em><span class="nocase">A Primer of Ecology</span></em> (3rd ed., p. 265). Sinauer Associates, Inc., Sunderland, Massachusetts, USA.
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<div id="ref-Mclean1991" class="csl-entry">
Mclean, R. A., Sanders, W. L., &amp; Stroup, W. W. (1991). <span class="nocase">A unified approach to mixed linear models</span>. <em>American Statistician</em>, <em>45</em>(1), 54–64.
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Expand Up @@ -659,7 +659,7 @@ <h3>References<a href="references.html#references" class="anchor-section" aria-l
Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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</div>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
</div>
<div id="ref-Upton2014" class="csl-entry">
Upton, G., &amp; Cook, I. (2014). <em><span class="nocase">Dictionary of Statistics</span></em> (3rd ed., p. 488). Oxford University Press, Oxford, UK.
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Law, A., Bunnefeld, N., &amp; Willby, N. J. (2014). <span class="nocase">Beavers and lilies: Selective herbivory and adaptive foraging behaviour</span>. <em>Freshwater Biology</em>, <em>59</em>(2), 224–232. <a href="https://doi.org/10.1111/fwb.12259">https://doi.org/10.1111/fwb.12259</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
</div>
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Spiegelhalter, D. (2019). <em><span class="nocase">The Art of Statistics Learning from Data</span></em> (p. 426). Penguin, Milton Keynes, UK.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Expand Up @@ -550,7 +550,7 @@ <h3>References<a href="references.html#references" class="anchor-section" aria-l
Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Expand Up @@ -669,7 +669,7 @@ <h2><span class="header-section-number">2.3</span> Managing data files<a href="C
<h3>References<a href="references.html#references" class="anchor-section" aria-label="Anchor link to header"></a></h3>
<div id="refs" class="references csl-bib-body hanging-indent" line-spacing="2">
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Wickham, H. (2014). <span class="nocase">Tidy data</span>. <em>Journal of Statistical Software</em>, <em>59</em>(10), 1–23. <a href="https://doi.org/10.18637/jss.v059.i10">https://doi.org/10.18637/jss.v059.i10</a>
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Fuentes-Montemayor, E., Watts, K., Sansum, P., Scott, W., &amp; Park, K. J. (2022). <span class="nocase">Moth community responses to woodland creation: The influence of woodland age, patch characteristics and landscape attributes</span>. <em>Diversity and Distributions</em>, <em>28</em>(9), 1993–2007. <a href="https://doi.org/10.1111/ddi.13599">https://doi.org/10.1111/ddi.13599</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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<div id="ref-Welch1938" class="csl-entry">
Welch, B. L. (1938). The significance of the difference between two means when the population variances are unequal. <em>Biometrika</em>, <em>29</em>(3/4), 350. <a href="https://doi.org/10.2307/2332010">https://doi.org/10.2307/2332010</a>
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Lumley, T., Diehr, P., Emerson, S., &amp; Chen, L. (2002). <span class="nocase">The importance of the normality assumption in large public health data sets</span>. <em>Annual Review of Public Health</em>, <em>23</em>, 151–169. <a href="https://doi.org/10.1146/annurev.publheath.23.100901.140546">https://doi.org/10.1146/annurev.publheath.23.100901.140546</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Miller, I., &amp; Miller, M. (2004). <em><span class="nocase">John E. Freund’s mathematical statistics</span></em> (7th ed., p. 614). Pearson Prentice Hall, Upper Saddle River, New Jersey, USA.
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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</div>
</section>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Head, M. L., Holman, L., Lanfear, R., Kahn, A. T., &amp; Jennions, M. D. (2015). <span class="nocase">The extent and consequences of p-hacking in science</span>. <em>PLoS Biology</em>, <em>13</em>(3), e1002106. <a href="https://doi.org/10.1371/journal.pbio.1002106">https://doi.org/10.1371/journal.pbio.1002106</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Tate, M. W., &amp; Hyer, L. A. (1973). Inaccuracy of the <span class="math inline">\(X^{2}\)</span> test of goodness of fit when expected frequencies are small. <em>Journal of the American Statistical Association</em>, <em>68</em>(344), 836–841. <a href="https://doi.org/10.1080/01621459.1973.10481433">https://doi.org/10.1080/01621459.1973.10481433</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Duthie, A. B., &amp; Nason, J. D. (2016). <span class="nocase">Plant connectivity underlies plant-pollinator-exploiter distributions in <em>Ficus petiolaris</em> and associated pollinating and non-pollinating fig wasps</span>. <em>Oikos</em>, <em>125</em>(11), 1597–1606. <a href="https://doi.org/10.1111/oik.02629">https://doi.org/10.1111/oik.02629</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Weiblen, G. D. (2002). <span class="nocase">How to be a fig wasp</span>. <em>Annual Review of Entomology</em>, <em>47</em>, 299–330.
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Rodgers, J. L., &amp; Nicewander, W. (1988). <span class="nocase">Thirteen ways to look at the correlation coefficient</span>. <em>American Statistician</em>, <em>42</em>(1), 59–66.
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Burrows, J. E., Copplestone, D., Raines, K. E., Beresford, N. A., &amp; Tinsley, M. C. (2022). <span class="nocase">Ecologically relevant radiation exposure triggers elevated metabolic rate and nectar consumption in bumblebees</span>. <em>Functional Ecology</em>, <em>36</em>(8), 1822–1833. <a href="https://doi.org/10.1111/1365-2435.14067">https://doi.org/10.1111/1365-2435.14067</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Sokal, R. R., &amp; Rohlf, F. J. (1995). <em><span>Biometry</span></em> (3rd ed., p. 887). W. H. Freeman &amp; Company, New York, USA.
</div>
<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
</div>
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Santín, C., Doerr, S. H., Kane, E. S., Masiello, C. A., Ohlson, M., Rosa, J. M. de la, Preston, C. M., &amp; Dittmar, T. (2016). <span class="nocase">Towards a global assessment of pyrogenic carbon from vegetation fires</span>. <em>Global Change Biology</em>, <em>22</em>(1), 76–91. <a href="https://doi.org/10.1111/gcb.12985">https://doi.org/10.1111/gcb.12985</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Santín, C., Doerr, S. H., Kane, E. S., Masiello, C. A., Ohlson, M., Rosa, J. M. de la, Preston, C. M., &amp; Dittmar, T. (2016). <span class="nocase">Towards a global assessment of pyrogenic carbon from vegetation fires</span>. <em>Global Change Biology</em>, <em>22</em>(1), 76–91. <a href="https://doi.org/10.1111/gcb.12985">https://doi.org/10.1111/gcb.12985</a>
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<div id="ref-Jamovi2022" class="csl-entry">
The jamovi project. (2024). <em>Jamovi (version 2.5) [computer software]</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
The jamovi project. (2024). <em>Jamovi (version 2.5)</em>. <a href="https://www.jamovi.org">https://www.jamovi.org</a>
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Expand Up @@ -530,7 +530,7 @@ <h2>Acknowledgements<a href="index.html#acknowledgements" class="anchor-section"
The book has also benefited from suggestions and corrections from numerous PhD students who served as teaching assistants on the class, including Adam Fell, Adrian Bach, Arianna Chiti, Benjamin Marshall, Chloe Pow, Daniel Atton Beckman, Eleri Kent, Rebecca Metcalf, and Shubham Pawar.
I am especially grateful to my co-teachers Martina Quaggiotto and Ian Jones.
Martina and Ian supported my plan to overhaul the learning material for our statistics class and put in a lot of work to fix teaching content that was not actually broken.
I am also grateful to several colleagues at the University of Stirling who have provided images and inspired me with interesting projects and datasets, including Alan Law, Becky Boulton, Carmen Carmona, David Copplestone, Elisa Fuentes-Montemayor, Izzy Jones, Jens-Arne Subke, Jessica Burrows, Kirsty Park, Lidia De Sousa Teixeira, Matthew Tinsley, Nigel Willby, and Nils Bunnefeld.</p>
I am also grateful to several colleagues at the University of Stirling who have provided images and inspired me with interesting projects and datasets, including Alan Law, Becky Boulton, Carmen Carmona, David Copplestone, Elisa Fuentes-Montemayor, Izzy Jones, Jens-Arne Subke, Jessica Burrows, Kirsty Park, Lidia de Sousa Teixeira, Matthew Tinsley, Nigel Willby, and Nils Bunnefeld.</p>
<p>I want to thank CRC Press, and especially Lara Spieker, for making the publishing process such a positive experience.
This book has benefited from feedback from three anonymous reviewers.
It was written using Bookdown <span class="citation">(<a href="#ref-xie2015" role="doc-biblioref">Xie, 2015</a>, <a href="#ref-Xie2016" role="doc-biblioref">2016</a>, <a href="#ref-Xie2023" role="doc-biblioref">2023</a>)</span> within RStudio <span class="citation">(<a href="#ref-Rstudio" role="doc-biblioref">RStudio Team, 2020</a>)</span> in the R programming language <span class="citation">(<a href="#ref-Rproject" role="doc-biblioref">R Core Team, 2022</a>)</span> running on the Xubuntu open source operating system (<a href="https://xubuntu.org/" class="uri">https://xubuntu.org/</a>).</p>
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Schloerke, B., &amp; Chang, W. (2023). <em>Shinylive: Run ’shiny’ applications in the browser</em>. <a href="https://CRAN.R-project.org/package=shinylive">https://CRAN.R-project.org/package=shinylive</a>
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