Added create_bdv_h5 to workflow

mesospim_stitcher/workflow.py

@@ -1,7 +1,12 @@
 from pathlib import Path
 
+import numpy as np
+
 from mesospim_stitcher.big_stitcher_bridge import run_big_stitcher
-from mesospim_stitcher.file_utils import write_big_stitcher_tile_config
+from mesospim_stitcher.file_utils import (
+    create_pyramid_bdv_h5,
+    write_big_stitcher_tile_config,
+)
 from mesospim_stitcher.fuse import fuse_image
 
 XML_PATH = (
@@ -23,6 +28,15 @@
     "_ch488_ch561_ch647_bdv_tile_config.txt"
 )
 
+DOWNSAMPLE_ARRAY = np.array(
+    [[1, 1, 1], [2, 2, 2], [4, 4, 4], [8, 8, 8], [16, 16, 16]]
+)
+SUBDIVISION_ARRAY = np.array(
+    [[32, 32, 16], [32, 32, 16], [32, 32, 16], [32, 32, 16], [32, 32, 16]]
+)
+
+create_pyramid_bdv_h5(Path(H5_PATH), DOWNSAMPLE_ARRAY, SUBDIVISION_ARRAY)
+
 tile_metadata = write_big_stitcher_tile_config(Path(TILE_CONFIG_PATH))
 
 result_big_stitcher = run_big_stitcher(