create standalone production config

docker-compose-production.yml

@@ -0,0 +1,101 @@
+version: "3"
+networks:
+    ezbids:
+
+services:
+    mongodb:
+        container_name: brainlife_ezbids-mongodb
+        image: mongo:4.4.15
+        platform: linux/amd64
+        volumes:
+            - /data/db
+        healthcheck:
+            test: echo 'db.runCommand("ping").ok' | mongo localhost:27017/test --quiet
+            interval: 10s
+            timeout: 10s
+            retries:
+                5
+        networks:
+            - ezbids
+
+    api:
+        container_name: brainlife_ezbids-api
+        build: .
+        platform: linux/amd64
+        volumes:
+            - ./api:/app/api
+            - /tmp:/tmp
+        depends_on:
+            mongodb:
+                condition: service_healthy
+        healthcheck:
+            test: ["CMD", "curl", "-f", "http://localhost:8082/health"]
+        working_dir: /app/api
+        command:
+            ./dev.sh
+        environment:
+            MONGO_CONNECTION_STRING: mongodb://mongodb:27017/ezbids
+            BRAINLIFE_AUTHENTICATION: ${BRAINLIFE_AUTHENTICATION}
+        networks:
+            - ezbids
+
+    handler:
+        container_name: brainlife_ezbids-handler
+        build: ./handler
+        platform: linux/amd64
+        volumes:
+            - .:/app
+            - /tmp:/tmp
+        depends_on:
+            mongodb:
+                condition: service_healthy
+            api:
+                condition: service_healthy
+        environment:
+            MONGO_CONNECTION_STRING: mongodb://mongodb:27017/ezbids
+        networks:
+            - ezbids
+        tty: true #turn on color for bids-validator output
+        command: pm2 start handler.js --attach
+
+    ui:
+        container_name: brainlife_ezbids-ui-builder
+        env_file:
+            - .env
+        build: ./ui/Dockerfile-production
+        platform: linux/amd64
+        volumes:
+            - ./ui/dist:/ui/dist
+        environment:
+            VITE_APIHOST: https://${SERVER_NAME}/api
+            VITE_BRAINLIFE_AUTHENTICATION: ${BRAINLIFE_AUTHENTICATION}
+
+    # by default this is not enabled, need to run docker compose with --profile development to enable this service
+    telemetry:
+        container_name: brainlife_ezbids-telemetry
+        build: ./telemetry
+        platform: linux/amd64
+        depends_on:
+            - mongodb
+        profiles: ["development"]
+        networks:
+            - ezbids
+
+    nginx:
+        env_file:
+            - .env
+        container_name: brainlife_ezbids-nginx
+        depends_on:
+            - ui
+            - api
+        image: nginx:latest
+        platform: linux/amd64
+        ports:
+            - 80:80
+            - 443:443
+        networks:
+            - ezbids
+        volumes:
+            - ./nginx/ssl:/etc/nginx/conf.d/ssl/
+            - ./nginx/production_nginx.conf:/etc/nginx/conf.d/default.conf
+            - ./ui/dist:/usr/share/nginx/html/ezbids:ro

handler/Dockerfile

@@ -7,7 +7,7 @@ ENV DEBIAN_FRONTEND noninteractive
 RUN apt update && \
     apt-get update && apt-get upgrade -y
 
-RUN apt install -y parallel python3 python3-pip tree curl unzip git jq python libgl-dev python-numpy bc
+RUN apt update && apt install -y parallel python3 python3-pip tree curl unzip git jq python libgl-dev python-numpy bc
 
 RUN pip3 install numpy==1.23.0 nibabel==4.0.0 pandas matplotlib pyyaml==5.4.1 pydicom==2.3.1 natsort pydeface && \
     pip3 install quickshear mne mne-bids

nginx/production_nginx.conf

@@ -8,13 +8,15 @@ server {
 
     #access_log  /var/log/nginx/host.access.log  main;
 
-    location / {
-        root   /usr/share/nginx/html;
-        index  index.html index.htm;
+    index index.html;
+
+    location = / {
+        return 301 /ezbids/;
     }
 
     location /ezbids {
-        proxy_pass http://ui:3000;
+        alias /usr/share/nginx/html/ezbids/;
+        try_files $uri $uri/ /ezbids/index.html;
     }
 
     location /api/ {

prod.sh

@@ -0,0 +1,35 @@
+#!/usr/bin/env bash
+
+set -ex
+
+BRAINLIFE_AUTHENTICATION=true
+while getopts "d" flag; do
+ case $flag in
+   d)
+     BRAINLIFE_AUTHENTICATION=false
+   ;;
+   \?)
+   ;;
+ esac
+done
+
+export BRAINLIFE_AUTHENTICATION
+
+git submodule update --init --recursive
+
+(cd api && npm install)
+(cd ui && npm install)
+
+mkdir -p /tmp/upload
+mkdir -p /tmp/workdir
+
+./generate_keys.sh
+
+# ok docker compose is now included in docker as an option for docker
+if [[ $(command -v docker-compose) ]]; then 
+    # if the older version is installed use the dash
+    docker-compose --file docker-compose-production.yml up
+else
+    # if the newer version is installed don't use the dash
+    docker compose --file docker-compose-production.yml up
+fi

ui/Dockerfile-production

@@ -0,0 +1,9 @@
+FROM node:20
+
+COPY . /ui
+WORKDIR /ui
+
+RUN npm install
+
+CMD [ "npm", "run", "build"] 
+